SRR2935780.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935780.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	513944
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC	3739	0.7275111685319802	No Hit
CCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC	3559	0.6924878975141261	No Hit
CTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGCT	2106	0.4097722709088928	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC	1506	0.2930280341827125	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	994	0.19340628550970534	No Hit
ACTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC	934	0.1817318618370873	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGC	897	0.17453263390563953	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTC	874	0.17005743816446928	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCG	827	0.16091247295425182	No Hit
CGCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTG	679	0.1321155612284607	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCC	645	0.1255000544806438	No Hit
GCCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTG	577	0.11226904098501005	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAAACGG	30	2.1631495E-6	45.000004	2
TATTGCG	30	2.1631495E-6	45.000004	1
CTAATGG	70	0.0	45.000004	2
TGATATC	25	3.887785E-5	45.0	24
AGGTACG	25	3.887785E-5	45.0	1
TCTTGCG	25	3.887785E-5	45.0	1
GTCGATA	25	3.887785E-5	45.0	40
AACCCAC	20	7.0296414E-4	45.0	41
CGCATGT	20	7.0296414E-4	45.0	44
ATTACGG	25	3.887785E-5	45.0	2
TAAACCG	20	7.0296414E-4	45.0	9
TTACTAG	25	3.887785E-5	45.0	1
CGATTCA	100	0.0	45.0	10
TAACGCG	20	7.0296414E-4	45.0	1
CCATGCG	20	7.0296414E-4	45.0	1
AAACGAT	20	7.0296414E-4	45.0	11
TACGATG	20	7.0296414E-4	45.0	1
ACTACGG	40	6.8030204E-9	45.0	2
TCGTCAA	20	7.0296414E-4	45.0	40
ACAGACG	25	3.887785E-5	45.0	1