SRR2935775.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935775.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	283978
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC	2970	1.0458556648754482	No Hit
GCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC	2561	0.9018304234835094	No Hit
CTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGCT	1681	0.5919472635204135	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC	1167	0.4109473269056053	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	798	0.28100768369380724	No Hit
ACTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC	713	0.25107578756100823	No Hit
CGCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTG	592	0.20846685306608256	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	581	0.20459331356654387	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCC	489	0.17219643775222024	No Hit
GCCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTG	383	0.13486960257484734	No Hit
GGCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTG	374	0.13170034298431568	No Hit
AGCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTG	358	0.1260661037122594	No Hit
TGCGAAGGGCTGCACCCACATGGTGGAGCACAGCCATCTCTAACTCCCTTC	348	0.12254470416722422	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	341	0.1200797244856996	No Hit
ACCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTG	339	0.11937544457669255	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCTGAC	20	7.024305E-4	45.000004	45
CGGGTGA	30	2.1597098E-6	45.000004	6
ATGGGCG	25	3.8833627E-5	45.000004	5
CGGGTCC	20	7.024305E-4	45.000004	6
TTGGCGG	50	2.1827873E-11	45.000004	2
GTCGCAC	20	7.024305E-4	45.000004	38
CGAACGG	30	2.1597098E-6	45.000004	2
ACGCCGT	20	7.024305E-4	45.000004	36
GATCGAC	20	7.024305E-4	45.000004	9
CGAGTGG	25	3.8833627E-5	45.000004	3
GGTCGCA	20	7.024305E-4	45.000004	37
CACGGGT	50	2.1827873E-11	45.000004	4
CCTAGTT	40	6.7830115E-9	45.000004	36
CGACGAT	20	7.024305E-4	45.000004	25
CGTGCGA	25	3.8833627E-5	45.000004	39
GGCACGG	30	2.1597098E-6	45.000004	2
TAGGTTG	20	7.024305E-4	45.000004	1
TTTCGAG	20	7.024305E-4	45.000004	1
ATTACGG	25	3.8833627E-5	45.000004	2
GGCCGAT	40	6.7830115E-9	45.000004	8