##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935775.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 283978 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.91788800540887 33.0 31.0 34.0 30.0 34.0 2 31.957229081126002 33.0 31.0 34.0 30.0 34.0 3 31.99599264731775 33.0 31.0 34.0 30.0 34.0 4 35.670129376219286 37.0 35.0 37.0 33.0 37.0 5 34.8147708625316 37.0 35.0 37.0 33.0 37.0 6 35.279113170738576 37.0 35.0 37.0 33.0 37.0 7 35.87865961447718 37.0 35.0 37.0 35.0 37.0 8 35.91316580861898 37.0 35.0 37.0 35.0 37.0 9 37.762235102719224 39.0 38.0 39.0 35.0 39.0 10 37.36143644930241 39.0 37.0 39.0 34.0 39.0 11 37.22325673115523 39.0 37.0 39.0 34.0 39.0 12 37.035104832064455 39.0 35.0 39.0 34.0 39.0 13 36.82525054757763 39.0 35.0 39.0 33.0 39.0 14 37.716805527188725 40.0 36.0 41.0 33.0 41.0 15 37.94254132362366 40.0 36.0 41.0 33.0 41.0 16 38.01288480093528 40.0 36.0 41.0 34.0 41.0 17 38.07508328109924 40.0 36.0 41.0 34.0 41.0 18 38.0982716971033 40.0 36.0 41.0 34.0 41.0 19 37.99470733648381 40.0 36.0 41.0 34.0 41.0 20 37.989199867595374 40.0 36.0 41.0 34.0 41.0 21 37.88994922141856 39.0 35.0 41.0 34.0 41.0 22 37.954795794040386 40.0 35.0 41.0 34.0 41.0 23 37.98758706660375 40.0 35.0 41.0 34.0 41.0 24 37.93947770601948 40.0 35.0 41.0 34.0 41.0 25 37.817813351738515 39.0 35.0 41.0 34.0 41.0 26 37.87242321588292 40.0 35.0 41.0 34.0 41.0 27 37.87460648360084 40.0 35.0 41.0 34.0 41.0 28 37.79523765925529 40.0 36.0 41.0 34.0 41.0 29 37.790663361246295 40.0 36.0 41.0 34.0 41.0 30 37.699476720027604 40.0 36.0 41.0 34.0 41.0 31 37.594317165414225 40.0 35.0 41.0 33.0 41.0 32 37.52936495080605 39.0 35.0 41.0 33.0 41.0 33 37.30322771482298 39.0 35.0 41.0 33.0 41.0 34 37.29475170611808 39.0 35.0 41.0 33.0 41.0 35 37.26805597616717 39.0 35.0 41.0 33.0 41.0 36 37.083583939600956 39.0 35.0 41.0 32.0 41.0 37 37.03267506637838 39.0 35.0 41.0 32.0 41.0 38 36.94157646014832 39.0 35.0 41.0 32.0 41.0 39 36.905161667453115 39.0 35.0 41.0 32.0 41.0 40 36.81779574474079 39.0 35.0 41.0 31.0 41.0 41 36.717154145743685 39.0 35.0 41.0 31.0 41.0 42 36.69295156667066 39.0 35.0 41.0 31.0 41.0 43 36.55160611033249 39.0 35.0 41.0 31.0 41.0 44 36.39887949066477 39.0 35.0 40.0 31.0 41.0 45 36.41029234659023 39.0 35.0 40.0 31.0 41.0 46 36.30442851206784 39.0 35.0 40.0 31.0 41.0 47 36.16145969053941 38.0 35.0 40.0 30.0 41.0 48 36.12508011183965 38.0 35.0 40.0 30.0 41.0 49 36.0675580502715 38.0 35.0 40.0 30.0 41.0 50 35.93057208657009 38.0 35.0 40.0 30.0 41.0 51 34.63308777440506 37.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 4.0 9 4.0 10 8.0 11 4.0 12 4.0 13 5.0 14 2.0 15 12.0 16 26.0 17 34.0 18 64.0 19 123.0 20 175.0 21 308.0 22 465.0 23 717.0 24 1129.0 25 1581.0 26 1993.0 27 2300.0 28 2725.0 29 3172.0 30 3959.0 31 5432.0 32 7199.0 33 10640.0 34 20176.0 35 29507.0 36 19957.0 37 30882.0 38 57278.0 39 84041.0 40 51.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.86956031805281 21.4414496897647 27.568684898125912 12.120305094056581 2 29.979435026656994 25.23188416004057 27.132383494496054 17.656297318806384 3 29.23641972265457 23.446182450753227 30.465388163871847 16.852009662720352 4 28.823359556021945 25.44246385283367 28.713844030171355 17.020332560973035 5 23.89304805301819 30.656600159167258 27.12639711526949 18.323954672545057 6 24.432174323363075 32.59196134911859 26.50487009557078 16.470994231947543 7 77.42747677637 5.945883131791899 10.8307685806647 5.7958715111734005 8 78.35043559712372 4.29822028466994 9.782447936107728 7.568896182098614 9 72.47885399573207 7.396699744346392 13.244687968786314 6.879758291135228 10 38.55016937931811 29.132538436076032 19.287761728021184 13.029530456584665 11 27.981040784849533 24.735366824190606 27.919416292811416 19.364176098148448 12 26.88306840670756 21.040010141630688 33.51597658973582 18.560944861925925 13 22.201015571628787 29.433970237131046 31.652099810548705 16.712914380691462 14 16.199846466979835 33.51280733014529 29.697018783145175 20.590327419729697 15 14.409566938283952 27.456000112684787 40.11261435745023 18.021818591581038 16 16.01708583059251 25.372740141841977 35.67212953116086 22.93804449640465 17 15.853340751748373 25.15194839036827 28.299727443675216 30.694983414208142 18 18.9990069653283 25.138567072097135 34.70374465627619 21.158681306298373 19 20.937185274915663 26.84574157153019 28.409947249434815 23.807125904119335 20 21.51751191993746 27.001387431420742 30.728084569931475 20.753016078710324 21 19.966687560303967 27.965546626851374 31.814436329574825 20.25332948326983 22 18.040482009169725 26.4862066779821 27.935262590764072 27.538048722084106 23 15.232165872004169 28.419807168160915 28.80786539802379 27.54016156181113 24 19.53073829662861 24.91566248089641 32.329969222967975 23.223629999507004 25 16.898492136714815 27.232743381529556 30.066061455464858 25.802703026290768 26 15.267027727500018 28.56946664882491 32.1926346407116 23.97087098296347 27 17.21893949531302 28.653980237905753 33.512103050236284 20.614977216544943 28 14.704308080203395 29.167400291571884 33.79346287388459 22.334828754340126 29 17.13407376627767 24.530773510624062 34.55936727492975 23.77578544816852 30 19.542006775172723 25.568529956545934 31.798942171576673 23.090521096704673 31 23.675073421180514 28.93111438210002 25.719597997027936 21.674214199691523 32 25.273084534717476 26.65769883582531 27.08836600018311 20.980850629274098 33 21.558008014705365 25.18293670636458 29.84315686426413 23.415898414665925 34 20.470247695243998 24.361042052553366 31.44363295748262 23.725077294720013 35 20.868165843832973 22.385889047743134 31.12987625801999 25.616068850403906 36 22.58449598208312 23.38526223862412 32.749015768827164 21.2812260104656 37 21.303058687644818 25.734035735162582 33.39941826479516 19.56348731239744 38 21.33404700364113 28.046890956341684 26.981667593968545 23.63739444604864 39 22.948608695039756 22.662318912028397 31.050996908211197 23.338075484720648 40 26.365774813541893 20.729422701758587 29.81287282817683 23.091929656522687 41 21.43370261076562 22.033749093239617 29.25649170006127 27.27605659593349 42 22.337998013930658 22.050651811055786 32.191930360802594 23.419419814210958 43 23.419067674256453 22.805992013465833 31.327778912450967 22.447161399826747 44 20.133601898738636 24.669516652698448 29.468832092626897 25.728049355936022 45 21.517864059891963 23.644437245138707 27.39437562064667 27.443323074322656 46 25.330835487256053 22.289050560254665 29.813577108085838 22.56653684440344 47 20.824500489474538 22.740141841973674 33.94840445386615 22.486953214685645 48 21.001626886589804 21.05937783912838 32.25778053229475 25.681214741987056 49 21.556247314932847 19.416292811414966 36.30915070885773 22.718309164794455 50 22.01085999619689 19.569121551669497 32.43807618900056 25.981942263133064 51 19.654339420659348 20.893167780602724 28.211692455049338 31.240800343688598 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 677.0 1 640.0 2 603.0 3 966.5 4 1330.0 5 924.5 6 519.0 7 542.5 8 566.0 9 610.5 10 655.0 11 677.5 12 700.0 13 724.5 14 749.0 15 750.5 16 752.0 17 799.0 18 846.0 19 808.0 20 770.0 21 816.5 22 863.0 23 927.5 24 992.0 25 999.0 26 1378.0 27 1750.0 28 2256.0 29 2762.0 30 3138.0 31 3514.0 32 3806.5 33 4099.0 34 5204.0 35 6309.0 36 6742.5 37 7176.0 38 8305.0 39 9434.0 40 11529.0 41 13624.0 42 17217.0 43 20810.0 44 23035.0 45 25260.0 46 30173.5 47 35087.0 48 39445.5 49 43804.0 50 40958.0 51 38112.0 52 29931.5 53 21751.0 54 17375.0 55 12999.0 56 10859.0 57 8719.0 58 7512.5 59 6306.0 60 5306.0 61 4306.0 62 3637.0 63 2968.0 64 2276.0 65 1584.0 66 1296.0 67 1008.0 68 831.0 69 654.0 70 485.0 71 316.0 72 267.0 73 218.0 74 220.5 75 140.0 76 57.0 77 48.5 78 40.0 79 32.5 80 25.0 81 20.0 82 15.0 83 15.5 84 16.0 85 9.5 86 3.0 87 1.5 88 0.0 89 0.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 283978.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.80684419215573 #Duplication Level Percentage of deduplicated Percentage of total 1 69.57626765551436 23.52154040101698 2 13.001541602433232 8.790821824225821 3 5.4685221449106285 5.546204283430407 4 2.8436315153535268 3.8453683031784154 5 1.6749302112411983 2.8312052342082836 6 1.1072455314361902 2.2459486298234372 7 0.7208032998625057 1.7057659396150406 8 0.5458105912253656 1.476170689278747 9 0.42914878546727214 1.3057349512990444 >10 4.14357735094371 32.41765207163935 >50 0.42185742260739134 8.760185648184015 >100 0.0583309028790467 3.6576777074280398 >500 0.00416649306278905 0.945143637887442 >1k 0.00416649306278905 2.950580678784976 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC 2970 1.0458556648754482 No Hit GCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC 2561 0.9018304234835094 No Hit CTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGCT 1681 0.5919472635204135 Illumina Single End Adapter 1 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC 1167 0.4109473269056053 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 798 0.28100768369380724 No Hit ACTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC 713 0.25107578756100823 No Hit CGCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTG 592 0.20846685306608256 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 581 0.20459331356654387 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCC 489 0.17219643775222024 No Hit GCCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTG 383 0.13486960257484734 No Hit GGCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTG 374 0.13170034298431568 No Hit AGCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTG 358 0.1260661037122594 No Hit TGCGAAGGGCTGCACCCACATGGTGGAGCACAGCCATCTCTAACTCCCTTC 348 0.12254470416722422 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 341 0.1200797244856996 No Hit ACCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTG 339 0.11937544457669255 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 7.042799090070358E-4 0.0 0.0 0.6261048391072548 0.0 2 7.042799090070358E-4 0.0 0.0 3.407306199776039 0.0 3 7.042799090070358E-4 0.0 0.0 4.531689074505771 0.0 4 7.042799090070358E-4 0.0 0.0 5.721217840818655 0.0 5 7.042799090070358E-4 0.0 0.0 8.658417201332497 0.0 6 7.042799090070358E-4 0.0 0.0 10.12719295156667 0.0 7 7.042799090070358E-4 0.0 0.0 11.676256611427645 0.0 8 7.042799090070358E-4 0.0 0.0 13.951784997429378 0.0 9 7.042799090070358E-4 0.0 0.0 14.824387804689096 0.0 10 7.042799090070358E-4 0.0 0.0 16.74355055673327 0.0 11 7.042799090070358E-4 0.0 0.0 19.56736085189698 0.0 12 7.042799090070358E-4 0.0 0.0 21.760488488544887 0.0 13 7.042799090070358E-4 0.0 0.0 22.720774144475982 0.0 14 7.042799090070358E-4 0.0 0.0 23.080661177978577 0.0 15 7.042799090070358E-4 0.0 0.0 23.64056370563917 0.0 16 7.042799090070358E-4 0.0 0.0 24.93996013775715 0.0 17 7.042799090070358E-4 0.0 0.0 26.71192838881885 0.0 18 7.042799090070358E-4 0.0 0.0 28.90787314510279 0.0 19 7.042799090070358E-4 0.0 0.0 30.01394474219834 0.0 20 7.042799090070358E-4 0.0 0.0 30.96296191958532 0.0 21 7.042799090070358E-4 0.0 0.0 32.09016191395108 0.0 22 7.042799090070358E-4 0.0 0.0 33.293776278444106 0.0 23 7.042799090070358E-4 0.0 0.0 34.56042369479326 0.0 24 7.042799090070358E-4 0.0 0.0 35.50380663290818 0.0 25 7.042799090070358E-4 0.0 0.0 36.24928691659213 0.0 26 7.042799090070358E-4 0.0 0.0 36.92257850960286 0.0 27 7.042799090070358E-4 0.0 0.0 37.65995957433322 0.0 28 7.042799090070358E-4 0.0 0.0 38.3786772214749 0.0 29 7.042799090070358E-4 0.0 0.0 39.156554380973176 0.0 30 7.042799090070358E-4 0.0 0.0 40.026340068596866 0.0 31 7.042799090070358E-4 0.0 0.0 40.824289205501834 0.0 32 7.042799090070358E-4 0.0 0.0 41.53490763368993 0.0 33 7.042799090070358E-4 0.0 0.0 42.19024008902098 0.0 34 7.042799090070358E-4 0.0 0.0 42.89487213798252 0.0 35 7.042799090070358E-4 0.0 0.0 43.700216213932066 0.0 36 7.042799090070358E-4 0.0 0.0 44.37491636676081 0.0 37 7.042799090070358E-4 0.0 0.0 45.012641824366675 0.0 38 7.042799090070358E-4 0.0 0.0 45.623252505475776 0.0 39 7.042799090070358E-4 0.0 0.0 46.35042151152554 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCCTGAC 20 7.024305E-4 45.000004 45 CGGGTGA 30 2.1597098E-6 45.000004 6 ATGGGCG 25 3.8833627E-5 45.000004 5 CGGGTCC 20 7.024305E-4 45.000004 6 TTGGCGG 50 2.1827873E-11 45.000004 2 GTCGCAC 20 7.024305E-4 45.000004 38 CGAACGG 30 2.1597098E-6 45.000004 2 ACGCCGT 20 7.024305E-4 45.000004 36 GATCGAC 20 7.024305E-4 45.000004 9 CGAGTGG 25 3.8833627E-5 45.000004 3 GGTCGCA 20 7.024305E-4 45.000004 37 CACGGGT 50 2.1827873E-11 45.000004 4 CCTAGTT 40 6.7830115E-9 45.000004 36 CGACGAT 20 7.024305E-4 45.000004 25 CGTGCGA 25 3.8833627E-5 45.000004 39 GGCACGG 30 2.1597098E-6 45.000004 2 TAGGTTG 20 7.024305E-4 45.000004 1 TTTCGAG 20 7.024305E-4 45.000004 1 ATTACGG 25 3.8833627E-5 45.000004 2 GGCCGAT 40 6.7830115E-9 45.000004 8 >>END_MODULE