SRR2935772.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935772.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	339187
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC	2376	0.7004985450503705	TruSeq Adapter, Index 14 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC	2001	0.58994006256136	TruSeq Adapter, Index 14 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGC	1463	0.4313254930171263	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCG	1386	0.40862415127938273	No Hit
CTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGCT	1218	0.35909395112430603	TruSeq Adapter, Index 15 (95% over 22bp)
GAATCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTC	1147	0.33816154510638674	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	758	0.22347554593778654	No Hit
TCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC	677	0.19959491372016028	TruSeq Adapter, Index 14 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTG	488	0.14387343854569898	No Hit
ACTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC	486	0.14328379330575758	TruSeq Adapter, Index 15 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCC	407	0.1199928063280727	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACATG	35	1.2085366E-7	45.000004	1
CGCGCGA	35	1.2085366E-7	45.000004	3
TTCGTAC	30	2.1609612E-6	45.000004	33
GCCGCGC	35	1.2085366E-7	45.000004	1
CATACGA	30	2.1609612E-6	45.000004	18
ATTGCGG	30	2.1609612E-6	45.000004	2
TGTACGG	30	2.1609612E-6	45.000004	2
GATTAAT	30	2.1609612E-6	45.000004	9
CATGGCA	20	7.0262473E-4	45.0	30
CGGGTAT	40	6.7902874E-9	45.0	6
GCCTTCA	25	3.884972E-5	45.0	33
GGTAATC	20	7.0262473E-4	45.0	8
GATCGAT	20	7.0262473E-4	45.0	11
AGCCCCC	20	7.0262473E-4	45.0	23
TATGGGT	25	3.884972E-5	45.0	4
CGTGAAT	20	7.0262473E-4	45.0	22
TAGCGGA	25	3.884972E-5	45.0	3
ACTCTGC	20	7.0262473E-4	45.0	39
CAATTAA	20	7.0262473E-4	45.0	32
ACCCTAT	20	7.0262473E-4	45.0	13