SRR2935769.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935769.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1007140
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8039	0.7982008459598467	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTC	7815	0.7759596481124769	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGC	7573	0.7519312111523722	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCG	7051	0.700101276883055	No Hit
GCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC	2695	0.26758941160116767	No Hit
CGCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTG	1705	0.16929126040073872	No Hit
GAACTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCT	1693	0.16809976765891535	No Hit
CCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC	1341	0.13314931389876283	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTT	1298	0.1288797982405624	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCT	1216	0.12073793117143596	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGCAAGCGT	1048	0.10405703278590862	No Hit
CTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGCT	1025	0.10177333836408048	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGAT	20	7.0328685E-4	45.000004	15
CAATCGA	20	7.0328685E-4	45.000004	5
TAATGCG	20	7.0328685E-4	45.000004	1
TAGTACG	25	3.8904604E-5	45.0	1
CGTTTTT	3995	0.0	42.803505	1
TACGAAT	125	0.0	41.4	12
CGACAGG	155	0.0	40.64516	2
TACGGCT	870	0.0	40.344826	7
GTTTGCG	40	3.4576442E-7	39.375004	1
ACGATAG	40	3.4576442E-7	39.375004	1
GTATACG	40	3.4576442E-7	39.375004	1
ACGGCTG	915	0.0	38.60656	8
TCGTGCG	35	6.247521E-6	38.571426	1
CGAATAT	140	0.0	38.571426	14
AGTACCG	35	6.247521E-6	38.571426	1
CTACGAA	135	0.0	38.333332	11
TAATACG	65	9.094947E-12	38.07692	4
CGTGCGG	95	0.0	37.894737	2
TCGTCCC	95	0.0	37.894737	38
CACGAAC	30	1.1398217E-4	37.499996	42