##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935769.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1007140 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.12967015509264 33.0 31.0 34.0 30.0 34.0 2 32.16912941596998 33.0 31.0 34.0 30.0 34.0 3 32.18535357547113 34.0 31.0 34.0 30.0 34.0 4 35.84685644498282 37.0 35.0 37.0 35.0 37.0 5 34.88952578588876 37.0 35.0 37.0 33.0 37.0 6 35.378674265742596 37.0 35.0 37.0 33.0 37.0 7 35.929235260241875 37.0 35.0 37.0 35.0 37.0 8 35.91054868240761 37.0 35.0 37.0 35.0 37.0 9 37.802163552237026 39.0 38.0 39.0 35.0 39.0 10 37.46823976805608 39.0 37.0 39.0 35.0 39.0 11 37.39368806720019 39.0 37.0 39.0 35.0 39.0 12 37.36613281172429 39.0 37.0 39.0 35.0 39.0 13 37.32752745397859 39.0 37.0 39.0 34.0 39.0 14 38.53105625831563 40.0 38.0 41.0 34.0 41.0 15 38.57227594971901 40.0 38.0 41.0 34.0 41.0 16 38.600244256012076 40.0 38.0 41.0 34.0 41.0 17 38.52961058045555 40.0 38.0 41.0 34.0 41.0 18 38.4759278749727 40.0 38.0 41.0 34.0 41.0 19 38.35691264372381 40.0 37.0 41.0 34.0 41.0 20 38.26159421728856 40.0 37.0 41.0 34.0 41.0 21 38.239598268363885 40.0 37.0 41.0 34.0 41.0 22 38.27312885994003 40.0 37.0 41.0 34.0 41.0 23 38.246499990070895 40.0 37.0 41.0 34.0 41.0 24 38.235113291101534 40.0 37.0 41.0 34.0 41.0 25 38.11938260817761 40.0 37.0 41.0 34.0 41.0 26 38.08788053299442 40.0 37.0 41.0 34.0 41.0 27 38.094852751355326 40.0 37.0 41.0 34.0 41.0 28 37.985441944516154 40.0 36.0 41.0 34.0 41.0 29 37.92641241535437 40.0 36.0 41.0 34.0 41.0 30 37.80604980439661 40.0 36.0 41.0 33.0 41.0 31 37.739131600373334 40.0 36.0 41.0 33.0 41.0 32 37.56849395317433 40.0 36.0 41.0 33.0 41.0 33 37.354906964275074 40.0 36.0 41.0 33.0 41.0 34 37.18649244395019 40.0 36.0 41.0 32.0 41.0 35 37.10561391663522 40.0 36.0 41.0 32.0 41.0 36 37.034614849971206 40.0 36.0 41.0 31.0 41.0 37 36.97743412038049 40.0 36.0 41.0 31.0 41.0 38 36.91768274519928 40.0 35.0 41.0 31.0 41.0 39 36.85963520463888 40.0 35.0 41.0 31.0 41.0 40 36.728009015628416 40.0 35.0 41.0 31.0 41.0 41 36.651591635720955 40.0 35.0 41.0 30.0 41.0 42 36.66981055265405 40.0 35.0 41.0 31.0 41.0 43 36.57669837361241 40.0 35.0 41.0 30.0 41.0 44 36.44322040629903 39.0 35.0 41.0 30.0 41.0 45 36.42170899775602 39.0 35.0 41.0 30.0 41.0 46 36.31814643445797 39.0 35.0 41.0 30.0 41.0 47 36.20166610401731 39.0 35.0 41.0 29.0 41.0 48 36.1719204877177 39.0 35.0 41.0 29.0 41.0 49 36.153873344321546 39.0 35.0 41.0 29.0 41.0 50 36.05240085787477 39.0 35.0 41.0 29.0 41.0 51 34.98367059197331 38.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 5.0 8 11.0 9 14.0 10 23.0 11 16.0 12 18.0 13 20.0 14 22.0 15 32.0 16 66.0 17 127.0 18 284.0 19 574.0 20 1059.0 21 1781.0 22 2696.0 23 3828.0 24 5130.0 25 7652.0 26 10211.0 27 11674.0 28 11939.0 29 12096.0 30 13964.0 31 17105.0 32 21904.0 33 29999.0 34 51526.0 35 70209.0 36 66485.0 37 100266.0 38 189081.0 39 377010.0 40 313.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.88053299441984 20.391703238874438 23.145441547351908 13.582322219353815 2 33.261810671803325 26.624004607105267 23.868280477391426 16.245904243699982 3 30.13404293345513 26.37955001290784 27.925710427547312 15.56069662608972 4 26.37518120618782 24.288480251007805 31.29703914053657 18.039299402267808 5 26.431379947177152 29.40137418829557 26.360386837976847 17.80685902655043 6 24.677006175904044 35.467263736918405 26.370613817344164 13.485116269833389 7 77.7955398455031 5.381972714816212 12.964036777409296 3.858450662271382 8 79.24886311734217 7.091764799332764 10.026014258196478 3.6333578251285816 9 73.23609428679231 7.019480906328813 11.357705979307744 8.386718827571142 10 35.7643425938797 32.941001251067384 18.542307921440912 12.75234823361201 11 26.51756458883571 24.973290704370793 29.980936116130824 18.52820859066267 12 23.930039517842605 23.040888059256908 31.85157972079353 21.177492702106957 13 23.37619397501837 24.4767361042159 33.59542863951387 18.55164128125186 14 20.005461008400026 28.684095557717892 30.486426911849396 20.824016522032686 15 18.984649601842843 26.91919693389201 34.648410350100285 19.44774311416486 16 22.43551045534881 27.359155628810296 30.455745973747444 19.749587942093452 17 22.23335385348611 26.573763329825052 30.472426872132967 20.720455944555873 18 23.09559743431896 25.615207419028142 30.972456659451513 20.316738487201384 19 21.753281569593106 27.46281549734893 29.79704906964275 20.986853863415213 20 24.002323410846554 26.815636356415197 31.48350775463193 17.698532478106323 21 23.250491490756005 28.321683182079948 30.721448855174057 17.70637647198999 22 22.496475167305437 23.872351410925987 31.702543837003795 21.92862958476478 23 20.854697460134638 27.004090791746926 32.18589272593681 19.955319022181623 24 21.565621462755924 24.984609885418116 31.647735170879916 21.802033480946044 25 20.29886609607403 30.08261016343309 29.237742518418493 20.38078122207439 26 20.3472208431797 27.310999463828267 30.104553488095004 22.237226204897034 27 21.2588120817364 27.343467641042952 29.859304565403022 21.53841571181762 28 18.354945687789183 27.838930039517845 32.210119745020556 21.59600452767242 29 20.60210099886808 27.492304942709055 30.30601505252497 21.59957900589789 30 21.833310165418908 27.37951029648311 30.751831920090556 20.035347618007428 31 22.606092499553192 26.744543956153066 27.9395118851401 22.709851659153642 32 23.03721428996962 28.87274857517326 27.863752804972496 20.226284329884624 33 22.238516988700678 27.738348193895586 27.550390213872948 22.47274460353079 34 22.00111205989237 27.47046090910896 29.567388843656296 20.961038187342375 35 21.901125960641025 27.21031832714419 28.580038524931982 22.3085171872828 36 22.87348332903072 29.399686240244655 26.880870584030024 20.8459598466946 37 22.099608793216436 27.97247651766388 28.68776932700518 21.2401453621145 38 20.801378159938043 28.943344520126296 26.86994856722998 23.385328752705682 39 22.71352542844093 27.98667513950394 27.732490021248285 21.56730941080684 40 22.631312429255118 26.680799094465517 28.53515896498997 22.152729511289394 41 22.111722302758306 26.36296840558413 28.144945092042818 23.38036419961475 42 21.49979148877018 26.612288261810672 28.342335722938223 23.545584526480926 43 22.780944059415773 26.503961713366564 27.550588795996582 23.16450543122108 44 22.16891395436583 26.384315983875133 28.171257223424746 23.275512838334294 45 21.068073951982843 26.149194749488654 28.031058244136865 24.75167305439164 46 22.860277617808844 27.706872927299088 27.299580991719125 22.133268463172946 47 20.70049844113033 26.782671723891415 30.69106579025756 21.825764044720692 48 21.559068252675896 26.693111186131024 28.729868737216275 23.017951823976805 49 21.190599122267013 25.613718053100857 30.64191671465735 22.55376610997478 50 20.977520503604268 25.824115813094505 30.217447425382765 22.980916257918462 51 20.3456321861906 24.8709216196358 28.61687550886669 26.16657068530691 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 473.0 1 882.0 2 1291.0 3 7441.0 4 13591.0 5 8883.0 6 4175.0 7 3991.0 8 3807.0 9 3867.0 10 3927.0 11 3978.0 12 4029.0 13 3967.5 14 3906.0 15 3823.0 16 3740.0 17 3727.0 18 3714.0 19 3707.0 20 3700.0 21 3851.5 22 4003.0 23 4358.5 24 4714.0 25 5597.5 26 7892.5 27 9304.0 28 10837.0 29 12370.0 30 15403.5 31 18437.0 32 21990.0 33 25543.0 34 28875.5 35 32208.0 36 35202.0 37 38196.0 38 41529.5 39 44863.0 40 47649.5 41 50436.0 42 54547.5 43 58659.0 44 62468.5 45 66278.0 46 68979.0 47 71680.0 48 90179.0 49 108678.0 50 99287.5 51 89897.0 52 86670.0 53 83443.0 54 72792.0 55 62141.0 56 55174.0 57 48207.0 58 42897.5 59 37588.0 60 33928.5 61 30269.0 62 25993.5 63 21718.0 64 18220.5 65 14723.0 66 11609.5 67 8496.0 68 6765.5 69 5035.0 70 4150.5 71 3266.0 72 2480.5 73 1695.0 74 1472.0 75 972.5 76 696.0 77 493.5 78 291.0 79 229.0 80 167.0 81 95.0 82 23.0 83 20.0 84 17.0 85 13.0 86 9.0 87 6.5 88 4.0 89 2.5 90 1.0 91 1.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1007140.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.355394063103702 #Duplication Level Percentage of deduplicated Percentage of total 1 74.63238472509055 21.908630634741943 2 8.916364426922026 5.234867827250717 3 3.1312797585137586 2.7575985369897476 4 1.630643276201366 1.9147270379696615 5 1.1096871936012138 1.6287652427471642 6 0.8761712380850479 1.543221117644642 7 0.7494338463728674 1.5399948119152127 8 0.6520487614374937 1.5312918672285059 9 0.5324990408283371 1.4068547263566522 >10 7.447901758199061 48.81471509134044 >50 0.2763257538315714 4.873383861795112 >100 0.03845417265854492 1.911930870878956 >500 0.002722419303258252 0.6884909118602396 >1k 0.002722419303258252 1.200863211182812 >5k 0.001361209651629126 3.04466425009814 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8039 0.7982008459598467 No Hit GAATCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTC 7815 0.7759596481124769 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGC 7573 0.7519312111523722 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCG 7051 0.700101276883055 No Hit GCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC 2695 0.26758941160116767 No Hit CGCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTG 1705 0.16929126040073872 No Hit GAACTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCT 1693 0.16809976765891535 No Hit CCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC 1341 0.13314931389876283 No Hit CGTTTCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTT 1298 0.1288797982405624 No Hit GAATGACTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCT 1216 0.12073793117143596 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGCAAGCGT 1048 0.10405703278590862 No Hit CTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGCT 1025 0.10177333836408048 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.10931945906229522 0.0 2 0.0 0.0 0.0 0.6187818972536092 0.0 3 0.0 0.0 0.0 0.9499175884186906 0.0 4 0.0 0.0 0.0 1.4354508807117183 0.0 5 0.0 0.0 0.0 2.9640367774092975 0.0 6 0.0 0.0 0.0 3.6972019778779512 0.0 7 0.0 0.0 0.0 4.338820819349842 0.0 8 0.0 0.0 0.0 5.076751990785789 0.0 9 0.0 0.0 0.0 5.380384057827114 0.0 10 0.0 0.0 0.0 6.674643048632762 0.0 11 0.0 0.0 0.0 7.444843815159759 0.0 12 0.0 0.0 0.0 8.85140099688226 0.0 13 0.0 0.0 0.0 9.166451536032726 0.0 14 0.0 0.0 0.0 9.309827829298806 0.0 15 0.0 0.0 0.0 9.598764819190976 0.0 16 0.0 0.0 0.0 9.9914609686836 0.0 17 0.0 0.0 0.0 10.492285084496693 0.0 18 0.0 0.0 0.0 11.030641221677225 0.0 19 0.0 0.0 0.0 11.491649621701054 0.0 20 9.929106181861508E-5 0.0 0.0 11.833508747542545 0.0 21 1.9858212363723016E-4 0.0 0.0 12.22541056854062 0.0 22 1.9858212363723016E-4 0.0 0.0 12.694560835633576 0.0 23 1.9858212363723016E-4 0.0 0.0 13.143257143991898 0.0 24 1.9858212363723016E-4 0.0 0.0 13.478066604444267 0.0 25 1.9858212363723016E-4 0.0 0.0 13.786067478205611 0.0 26 1.9858212363723016E-4 0.0 0.0 14.090493873741487 0.0 27 2.978731854558453E-4 0.0 0.0 14.41418273527017 0.0 28 2.978731854558453E-4 0.0 0.0 14.719304168238775 0.0 29 2.978731854558453E-4 0.0 0.0 15.068610123716663 0.0 30 2.978731854558453E-4 0.0 0.0 15.496256726969438 0.0 31 3.9716424727446033E-4 0.0 0.0 15.854399586949183 0.0 32 3.9716424727446033E-4 0.0 0.0 16.192187779256113 0.0 33 3.9716424727446033E-4 0.0 0.0 16.538217129693987 0.0 34 4.964553090930755E-4 0.0 0.0 16.887820958357327 0.0 35 4.964553090930755E-4 0.0 0.0 17.270786583791725 0.0 36 4.964553090930755E-4 0.0 0.0 17.619397501836886 0.0 37 4.964553090930755E-4 0.0 0.0 17.99263260321306 0.0 38 4.964553090930755E-4 0.0 0.0 18.38552733482932 0.0 39 4.964553090930755E-4 0.0 0.0 18.810095915165718 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCGGAT 20 7.0328685E-4 45.000004 15 CAATCGA 20 7.0328685E-4 45.000004 5 TAATGCG 20 7.0328685E-4 45.000004 1 TAGTACG 25 3.8904604E-5 45.0 1 CGTTTTT 3995 0.0 42.803505 1 TACGAAT 125 0.0 41.4 12 CGACAGG 155 0.0 40.64516 2 TACGGCT 870 0.0 40.344826 7 GTTTGCG 40 3.4576442E-7 39.375004 1 ACGATAG 40 3.4576442E-7 39.375004 1 GTATACG 40 3.4576442E-7 39.375004 1 ACGGCTG 915 0.0 38.60656 8 TCGTGCG 35 6.247521E-6 38.571426 1 CGAATAT 140 0.0 38.571426 14 AGTACCG 35 6.247521E-6 38.571426 1 CTACGAA 135 0.0 38.333332 11 TAATACG 65 9.094947E-12 38.07692 4 CGTGCGG 95 0.0 37.894737 2 TCGTCCC 95 0.0 37.894737 38 CACGAAC 30 1.1398217E-4 37.499996 42 >>END_MODULE