SRR2935768.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935768.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1210636
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGC	12795	1.0568824981249525	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCG	12329	1.018390333675853	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTC	11759	0.9713076432552807	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4890	0.40391992308175206	No Hit
GCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC	4366	0.3606368883793312	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC	2817	0.2326876121311443	Illumina Single End Adapter 1 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCT	2407	0.19882111551283785	No Hit
GAACTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCT	2311	0.19089139923147833	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	2100	0.17346254365474015	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCGCTAGTT	1852	0.15297744326122797	No Hit
CTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGCT	1795	0.14826917421917077	Illumina Single End Adapter 1 (95% over 22bp)
GAATGATCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTC	1792	0.1480213705853783	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTA	1746	0.1442217148672268	No Hit
CGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG	1565	0.1292708956284135	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTCGTC	40	6.8157533E-9	45.000004	30
ATATACG	25	3.8909282E-5	45.000004	1
CCCTTCG	25	3.8909282E-5	45.000004	33
GATTACG	20	7.0334354E-4	45.000004	1
AATCGGC	20	7.0334354E-4	45.000004	27
CGTTTTT	2210	0.0	41.538464	1
TGTTACG	45	1.9284926E-8	40.000004	1
GCGATTA	45	1.9284926E-8	40.000004	9
CTATGCG	40	3.4584264E-7	39.375004	1
CCGATCG	40	3.4584264E-7	39.375004	40
TACGGCT	1470	0.0	39.336735	7
CGTAAGG	195	0.0	39.23077	2
CGATCGA	35	6.248565E-6	38.571426	41
TAATGCG	65	9.094947E-12	38.07692	1
TTACGGG	395	0.0	37.594936	3
AGGGCGA	790	0.0	37.594936	6
TTGTCGT	30	1.139958E-4	37.499996	27
TCGACGG	30	1.139958E-4	37.499996	2
GTTTGCG	85	0.0	37.058826	1
ACGGCTG	1575	0.0	36.714287	8