##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935768.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1210636 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.069218989027256 33.0 31.0 34.0 30.0 34.0 2 32.12509788243535 33.0 31.0 34.0 30.0 34.0 3 32.14963952831404 33.0 31.0 34.0 30.0 34.0 4 35.807023746196215 37.0 35.0 37.0 35.0 37.0 5 34.93315827383293 37.0 35.0 37.0 33.0 37.0 6 35.36304801773613 37.0 35.0 37.0 33.0 37.0 7 35.89918026557942 37.0 35.0 37.0 35.0 37.0 8 35.87422974370496 37.0 35.0 37.0 35.0 37.0 9 37.74897491896821 39.0 38.0 39.0 35.0 39.0 10 37.37316584010388 39.0 37.0 39.0 34.0 39.0 11 37.27398078365421 39.0 37.0 39.0 34.0 39.0 12 37.116698165261894 39.0 37.0 39.0 34.0 39.0 13 36.993092060701976 39.0 37.0 39.0 33.0 39.0 14 37.92101837381343 40.0 37.0 41.0 33.0 41.0 15 38.006797253674925 40.0 37.0 41.0 33.0 41.0 16 38.16511982131706 40.0 37.0 41.0 33.0 41.0 17 38.12126849028114 40.0 37.0 41.0 33.0 41.0 18 38.110849173492284 40.0 37.0 41.0 33.0 41.0 19 38.042312470470065 40.0 37.0 41.0 34.0 41.0 20 37.93664900102095 40.0 36.0 41.0 33.0 41.0 21 37.914344195943286 40.0 36.0 41.0 33.0 41.0 22 38.01101569753419 40.0 36.0 41.0 34.0 41.0 23 38.003203274972826 40.0 36.0 41.0 34.0 41.0 24 37.9626906848962 40.0 36.0 41.0 34.0 41.0 25 37.86195272567477 40.0 36.0 41.0 34.0 41.0 26 37.84742978071031 40.0 36.0 41.0 34.0 41.0 27 37.83973465186894 40.0 36.0 41.0 34.0 41.0 28 37.74360831827238 40.0 36.0 41.0 33.0 41.0 29 37.69058494873769 40.0 36.0 41.0 33.0 41.0 30 37.58659084976822 40.0 35.0 41.0 33.0 41.0 31 37.50706570761154 40.0 35.0 41.0 33.0 41.0 32 37.43572799751536 40.0 35.0 41.0 33.0 41.0 33 37.27116325633799 40.0 35.0 41.0 32.0 41.0 34 37.08923656656501 40.0 35.0 41.0 32.0 41.0 35 37.05059819797197 40.0 35.0 41.0 32.0 41.0 36 36.95634030377421 39.0 35.0 41.0 31.0 41.0 37 36.956750831794196 39.0 35.0 41.0 31.0 41.0 38 36.812795092827244 39.0 35.0 41.0 31.0 41.0 39 36.77675948840114 39.0 35.0 41.0 31.0 41.0 40 36.65295431492208 39.0 35.0 41.0 31.0 41.0 41 36.468040765349784 39.0 35.0 41.0 30.0 41.0 42 36.572883178758936 39.0 35.0 41.0 31.0 41.0 43 36.47405000346925 39.0 35.0 41.0 31.0 41.0 44 36.428880357101555 39.0 35.0 41.0 31.0 41.0 45 36.41207266263353 39.0 35.0 41.0 31.0 41.0 46 36.31298011954047 39.0 35.0 41.0 31.0 41.0 47 36.154100819734424 38.0 35.0 41.0 30.0 41.0 48 36.08422597708973 38.0 35.0 40.0 30.0 41.0 49 36.09431654105776 38.0 35.0 40.0 30.0 41.0 50 35.95441734757598 38.0 35.0 40.0 30.0 41.0 51 34.73404061997165 37.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 16.0 9 20.0 10 21.0 11 29.0 12 29.0 13 34.0 14 47.0 15 55.0 16 93.0 17 159.0 18 279.0 19 611.0 20 1177.0 21 2149.0 22 3216.0 23 4608.0 24 5927.0 25 7843.0 26 9578.0 27 11304.0 28 12888.0 29 14830.0 30 18142.0 31 23483.0 32 31656.0 33 45644.0 34 83535.0 35 91408.0 36 86041.0 37 129279.0 38 228049.0 39 398217.0 40 268.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.7567823854569 20.715227368094126 24.499601862161708 12.028388384287267 2 30.86526420823435 28.603312638976536 24.266170839129188 16.26525231365993 3 30.439620166590124 27.846850746219342 26.227040993329126 15.486488093861409 4 27.629526959383334 23.566373377299204 31.063011508000756 17.74108815531671 5 27.70477666284498 28.838230483811817 24.771112043587006 18.685880809756195 6 24.85288724273853 35.61722929105032 25.05955547332146 14.470327992889686 7 77.57269732603359 5.239642634119587 12.746605916229155 4.441054123617668 8 79.12716952081385 7.526374566756647 8.82660023326582 4.519855679163679 9 73.89520879934184 5.507848767094321 10.37719017111667 10.219752262447177 10 43.421143927654555 20.748267852599792 19.351646572545338 16.478941647200315 11 32.12584129333673 23.496327550147196 24.38949444754658 19.988336708969502 12 27.667110510508525 20.31180305227996 29.191020257121053 22.830066180090462 13 27.54048285364056 20.440247935795732 32.75402350500068 19.26524570556303 14 22.647434901985402 25.787272144558727 30.413022576563066 21.152270376892808 15 20.06556884150149 24.03026177975874 35.504478637674744 20.399690741065026 16 25.109777009770074 24.11005454983992 28.037659544239556 22.742508896150454 17 24.997108957605754 24.154659203922566 28.694504376212173 22.153727462259507 18 25.090448326334258 24.081639733165048 29.40297496522489 21.424936975275806 19 24.992896295831283 25.669152412450973 27.192566551795917 22.145384739921823 20 24.326552324563288 27.703289841042228 28.69268714956436 19.27747068483012 21 23.794187517965764 27.17125543928976 30.72674197694435 18.307815065800128 22 23.039625453067643 21.763106334191285 31.318166649595753 23.879101563145323 23 22.178507825638754 25.357085036294976 30.699979184494765 21.76442795357151 24 23.39208482153182 24.91549896087676 28.206000812795917 23.486415404795498 25 23.516564846906913 28.252587895948906 26.173350206007424 22.057497051136757 26 20.806501706541024 24.40601468979941 28.606864491060897 26.18061911259867 27 22.328181220449416 25.69963225940745 28.670219620100507 23.301966900042622 28 19.832716026947818 25.39417298015258 29.750973868280806 25.022137124618794 29 22.134398778823694 24.493984979795744 29.3455671233963 24.026049117984265 30 23.28346422871945 24.392220287518295 29.471946976630463 22.852368507131786 31 25.068806808983048 24.18034818062572 27.026868522000008 23.723976488391227 32 26.474679424699083 24.571630118384054 26.329549096507954 22.62414136040891 33 25.047826101321952 22.976352925239297 27.230397906554906 24.745423066883852 34 22.778357821839098 24.248163775073596 30.521395365741643 22.45208303734566 35 22.798429916176293 24.67612065063322 28.0011498088608 24.52429962432969 36 24.9098820785108 24.901208951328062 29.15384971205218 21.03505925810896 37 22.24153254983331 25.62182191839661 27.970091753425475 24.166553778344603 38 24.01638477626636 25.33726074559157 27.008861457944423 23.63749302019765 39 22.08236001572727 24.623173274212892 28.17205171496635 25.12241499509349 40 24.056776768574533 22.465877439626773 30.793070749589475 22.68427504220922 41 21.524636637271648 24.61218731311476 28.619832881229367 25.243343168384218 42 22.529562973511442 22.94017359470559 30.871128894234108 23.65913453754886 43 22.034038307137735 22.238806709861596 30.545019312163195 25.182135670837475 44 22.994359989294882 22.314221615745776 29.23091664216164 25.460501752797704 45 21.72056671039024 21.950445881338403 28.145206321305494 28.18378108696586 46 24.11443241403692 24.057602780687176 27.965796490439736 23.86216831483617 47 19.913417410352903 23.82367615038707 32.67299171675053 23.58991472250949 48 21.983238562210275 25.441007866939362 28.428858880786628 24.146894690063736 49 22.807516049415348 22.139437452710805 31.430669499337537 23.622376998536307 50 21.918892218635495 22.436884414473056 29.74040091323899 25.90382245365246 51 21.362407858348835 22.722932409080844 28.02758219646533 27.887077536104986 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 532.0 1 1020.5 2 1509.0 3 4752.5 4 7996.0 5 5219.0 6 2442.0 7 2349.0 8 2256.0 9 2287.5 10 2319.0 11 2345.5 12 2372.0 13 2323.5 14 2275.0 15 2249.0 16 2223.0 17 2178.0 18 2133.0 19 2187.5 20 2242.0 21 2598.0 22 2954.0 23 3241.5 24 3529.0 25 3988.0 26 6121.5 27 7796.0 28 9451.0 29 11106.0 30 13064.0 31 15022.0 32 16842.5 33 18663.0 34 23411.5 35 28160.0 36 29689.0 37 31218.0 38 34717.5 39 38217.0 40 42716.0 41 47215.0 42 51621.0 43 56027.0 44 64363.5 45 72700.0 46 106068.0 47 139436.0 48 128745.0 49 118054.0 50 118986.0 51 119918.0 52 106166.0 53 92414.0 54 84628.5 55 76843.0 56 73362.0 57 69881.0 58 65551.5 59 61222.0 60 54782.0 61 48342.0 62 43529.0 63 38716.0 64 33483.0 65 28250.0 66 23905.5 67 19561.0 68 16193.0 69 12825.0 70 10215.0 71 7605.0 72 6785.5 73 5966.0 74 4548.5 75 2378.5 76 1626.0 77 1163.0 78 700.0 79 578.5 80 457.0 81 313.0 82 169.0 83 138.0 84 107.0 85 64.0 86 21.0 87 19.0 88 17.0 89 12.0 90 7.0 91 4.5 92 2.0 93 5.5 94 9.0 95 6.5 96 4.0 97 2.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1210636.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.34776405260724 #Duplication Level Percentage of deduplicated Percentage of total 1 73.04726390889464 20.707266019778775 2 10.663871845565884 6.04593845930686 3 3.843986160664577 3.26905238112021 4 1.9020291706769548 2.1567309660610614 5 1.1775653894390816 1.6690672908167818 6 0.8262573098620705 1.4053528360027177 7 0.6395387121878312 1.269064476092625 8 0.5149286628811944 1.1677660991424508 9 0.41178298864897867 1.0505814302788823 >10 6.51497932591866 45.721079926598534 >50 0.3959406495745153 6.725064730356724 >100 0.05426977772465903 2.7585813138288744 >500 0.002917729984974427 0.5477130444756293 >1k 0.0037930489804667545 2.4561067435372714 >5k 0.0 0.0 >10k+ 8.75318995492328E-4 3.050634282602633 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGC 12795 1.0568824981249525 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCG 12329 1.018390333675853 No Hit GAATCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTC 11759 0.9713076432552807 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4890 0.40391992308175206 No Hit GCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC 4366 0.3606368883793312 Illumina Single End Adapter 1 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC 2817 0.2326876121311443 Illumina Single End Adapter 1 (95% over 21bp) GAATGACTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCT 2407 0.19882111551283785 No Hit GAACTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCT 2311 0.19089139923147833 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 2100 0.17346254365474015 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCGCTAGTT 1852 0.15297744326122797 No Hit CTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGCT 1795 0.14826917421917077 Illumina Single End Adapter 1 (95% over 22bp) GAATGATCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTC 1792 0.1480213705853783 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTA 1746 0.1442217148672268 No Hit CGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG 1565 0.1292708956284135 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.4780363379248594E-4 0.0 0.0 0.15471206869777537 0.0 2 2.4780363379248594E-4 0.0 0.0 0.9005184052018939 0.0 3 2.4780363379248594E-4 0.0 0.0 1.2619813056938667 0.0 4 2.4780363379248594E-4 0.0 0.0 1.8155746235862802 0.0 5 2.4780363379248594E-4 0.0 0.0 3.77760119474392 0.0 6 2.4780363379248594E-4 0.0 0.0 4.5844498263722535 0.0 7 2.4780363379248594E-4 0.0 0.0 5.443750227153331 0.0 8 2.4780363379248594E-4 0.0 0.0 6.5022021482923025 0.0 9 2.4780363379248594E-4 0.0 0.0 6.891006049712713 0.0 10 2.4780363379248594E-4 0.0 0.0 8.732434852424676 0.0 11 2.4780363379248594E-4 0.0 0.0 9.862336821307148 0.0 12 2.4780363379248594E-4 0.0 0.0 11.867316022322152 0.0 13 2.4780363379248594E-4 0.0 0.0 12.288747402191905 0.0 14 2.4780363379248594E-4 0.0 0.0 12.502601938154822 0.0 15 2.4780363379248594E-4 0.0 0.0 12.91321255934897 0.0 16 2.4780363379248594E-4 0.0 0.0 13.482665309804103 0.0 17 3.304048450566479E-4 0.0 0.0 14.14925708470589 0.0 18 3.304048450566479E-4 0.0 0.0 14.869209242084326 0.0 19 3.304048450566479E-4 0.0 0.0 15.494913417410354 0.0 20 3.304048450566479E-4 0.0 0.0 15.989281666826363 0.0 21 3.304048450566479E-4 0.0 0.0 16.53321064300087 0.0 22 3.304048450566479E-4 0.0 0.0 17.194185535536693 0.0 23 4.130060563208099E-4 0.0 0.0 17.754882557597824 0.0 24 4.130060563208099E-4 0.0 0.0 18.218523156423565 0.0 25 4.130060563208099E-4 0.0 0.0 18.635328868462526 0.0 26 4.130060563208099E-4 0.0 0.0 19.05337359867045 0.0 27 4.130060563208099E-4 0.0 0.0 19.566740126677217 0.0 28 4.956072675849719E-4 0.0 0.0 19.98495005930767 0.0 29 4.956072675849719E-4 0.0 0.0 20.47717067723081 0.0 30 4.956072675849719E-4 0.0 0.0 21.06206985419234 0.0 31 5.782084788491338E-4 0.0 0.0 21.511668247103177 0.0 32 5.782084788491338E-4 0.0 0.0 21.945655011085083 0.0 33 5.782084788491338E-4 0.0 0.0 22.37922876901067 0.0 34 5.782084788491338E-4 0.0 0.0 22.858233193131543 0.0 35 5.782084788491338E-4 0.0 0.0 23.34979300136457 0.0 36 5.782084788491338E-4 0.0 0.0 23.788818439233594 0.0 37 5.782084788491338E-4 0.0 0.0 24.266914250030563 0.0 38 5.782084788491338E-4 0.0 0.0 24.803243914768768 0.0 39 6.608096901132958E-4 0.0 0.0 25.697732431548378 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTCGTC 40 6.8157533E-9 45.000004 30 ATATACG 25 3.8909282E-5 45.000004 1 CCCTTCG 25 3.8909282E-5 45.000004 33 GATTACG 20 7.0334354E-4 45.000004 1 AATCGGC 20 7.0334354E-4 45.000004 27 CGTTTTT 2210 0.0 41.538464 1 TGTTACG 45 1.9284926E-8 40.000004 1 GCGATTA 45 1.9284926E-8 40.000004 9 CTATGCG 40 3.4584264E-7 39.375004 1 CCGATCG 40 3.4584264E-7 39.375004 40 TACGGCT 1470 0.0 39.336735 7 CGTAAGG 195 0.0 39.23077 2 CGATCGA 35 6.248565E-6 38.571426 41 TAATGCG 65 9.094947E-12 38.07692 1 TTACGGG 395 0.0 37.594936 3 AGGGCGA 790 0.0 37.594936 6 TTGTCGT 30 1.139958E-4 37.499996 27 TCGACGG 30 1.139958E-4 37.499996 2 GTTTGCG 85 0.0 37.058826 1 ACGGCTG 1575 0.0 36.714287 8 >>END_MODULE