SRR2935766.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935766.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	990669
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGC	4638	0.4681684800876983	No Hit
GAATCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTC	4282	0.4322331676876939	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCG	4143	0.41820224514948995	No Hit
GCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC	3383	0.3414864096888062	No Hit
CCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC	3174	0.3203895549371183	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1872	0.1889632157663155	No Hit
CTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGCT	1775	0.1791718525562019	No Hit
TCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC	1154	0.11648693963372227	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGTG	20	7.032815E-4	45.0	34
CGACACG	25	3.8904145E-5	45.0	37
CGTTCGG	40	6.8139343E-9	45.0	2
ACTAGCG	20	7.032815E-4	45.0	1
TATAGCG	20	7.032815E-4	45.0	1
TAGTACG	25	3.8904145E-5	45.0	1
AGTCGAC	20	7.032815E-4	45.0	31
TCGATTG	60	3.6379788E-12	41.250004	1
CGTTTTT	1125	0.0	39.999996	1
ATGGGCG	260	0.0	39.807693	5
ACGGGTA	80	0.0	39.375	5
CGTGATA	35	6.2474173E-6	38.571426	19
GCTACGA	125	0.0	37.800003	10
CGGATTC	30	1.139808E-4	37.500004	14
TATGTCG	30	1.139808E-4	37.500004	1
ACGGTTT	30	1.139808E-4	37.500004	11
CGCGACC	145	0.0	37.241383	10
ACGCGAG	55	2.748493E-9	36.81818	1
CGACGGT	55	2.748493E-9	36.81818	28
TATTGCG	55	2.748493E-9	36.81818	1