SRR2935763.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935763.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1421290
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15953	1.1224310309648278	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTT	4300	0.30254205686383495	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTC	3448	0.2425965144340705	No Hit
CGCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTG	3173	0.22324789451836005	No Hit
CCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGC	3107	0.2186042257385896	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCT	2768	0.19475265427885935	No Hit
CTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGCT	2475	0.1741375792413934	No Hit
GCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGC	2392	0.16829781395774263	No Hit
CGTCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCT	2268	0.15957334534120413	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCC	2035	0.14317978737625678	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGACGT	20	7.0338504E-4	45.0	25
CGAGTAG	30	2.165867E-6	44.999996	32
CGTTTTT	9610	0.0	43.571796	1
ACGGGCC	140	0.0	41.785713	5
CGACGGT	105	0.0	40.714287	28
CGGTCTA	105	0.0	40.714287	31
GTTAGCG	50	1.0822987E-9	40.499996	1
ATAACGC	45	1.9288564E-8	40.0	11
TATCGCG	45	1.9288564E-8	40.0	1
TAGCACG	35	6.2493327E-6	38.571426	1
TCGTAAG	35	6.2493327E-6	38.571426	1
CGTTCTG	540	0.0	37.500004	1
CGAATAT	180	0.0	37.5	14
TCGTCGG	30	1.14005794E-4	37.499996	2
TCGACGG	120	0.0	37.499996	2
GCGTAAG	140	0.0	36.964283	1
TATTGCG	55	2.750312E-9	36.81818	1
GTTTTTT	11540	0.0	36.538128	2
CGTTTCT	580	0.0	36.46552	1
GCGAGAC	180	0.0	36.25	21