SRR2935760.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935760.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1436731
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTC	7906	0.5502769829564477	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7765	0.5404630372700248	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGC	7339	0.510812392855726	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCG	6787	0.4723918395301556	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC	3847	0.2677606316004875	No Hit
CCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC	2337	0.16266092956858313	No Hit
CTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGCT	1938	0.13488955134955674	No Hit
CGCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTG	1906	0.1326622728959005	No Hit
GAACTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCT	1817	0.12646765469666904	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTT	1463	0.10182838680309675	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCACGA	30	2.1658816E-6	45.000004	39
ACGTTAG	35	1.2122109E-7	45.0	1
ACCGCGT	20	7.033877E-4	45.0	21
TAGCGAT	25	3.891295E-5	45.0	1
CGTTTTT	3845	0.0	42.834854	1
CGCGTAG	45	1.9288564E-8	40.0	2
CACAACG	410	0.0	39.512196	12
CGTAAGG	305	0.0	38.360657	2
CGCATCG	85	0.0	37.058823	21
AGTACGG	165	0.0	36.818184	2
ACAACGA	435	0.0	36.72414	13
AGCGACT	430	0.0	36.104652	19
GCGCGTA	25	0.0021072836	36.0	1
CGTACGA	25	0.0021072836	36.0	27
TTAACGA	25	0.0021072836	36.0	15
TAATGCG	50	4.8803486E-8	36.0	1
TGTACGG	245	0.0	35.816326	2
CGAGATA	715	0.0	35.55944	19
CAACGAG	460	0.0	35.21739	14
TGGGCGA	495	0.0	35.0	6