SRR2935758.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935758.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	506958
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGC	3842	0.7578537078022242	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTC	3734	0.7365501678640045	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCG	3701	0.7300407528828818	No Hit
GCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC	2054	0.40516176882503085	No Hit
CCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC	1904	0.3755735189108368	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	984	0.19409891943711313	No Hit
CTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGCT	907	0.1789102844811602	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCT	780	0.1538588995538092	No Hit
GAACTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCT	767	0.15129458456124573	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGTTCGCTT	549	0.10829299468595031	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTT	548	0.10809573968652236	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTA	539	0.1063204446916707	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCG	25	3.8877093E-5	45.000004	1
CGACGGA	20	7.0295506E-4	45.000004	29
GTTTACG	20	7.0295506E-4	45.000004	1
TAGTTCA	25	3.8877093E-5	45.000004	30
CTAACGG	20	7.0295506E-4	45.000004	2
TACGCGG	35	1.2101373E-7	45.000004	2
TGCGCGA	25	3.8877093E-5	45.000004	15
TCTACGC	25	3.8877093E-5	45.000004	40
ACTACGG	20	7.0295506E-4	45.000004	2
GGACGCA	20	7.0295506E-4	45.000004	9
GTATCAC	20	7.0295506E-4	45.000004	38
CGGTCTA	25	3.8877093E-5	45.000004	31
CACGTAG	25	3.8877093E-5	45.000004	1
TTCGCGC	25	3.8877093E-5	45.000004	21
TCGACGT	35	1.2101373E-7	45.000004	26
TCGACAC	20	7.0295506E-4	45.000004	34
CGTCACG	20	7.0295506E-4	45.000004	36
AATCGCG	20	7.0295506E-4	45.000004	19
TAATACG	30	2.163093E-6	44.999996	4
ATCGTTC	30	2.163093E-6	44.999996	30