SRR2935757.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935757.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	359269
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGC	2195	0.6109628161628194	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTC	2170	0.6040042419468421	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCG	1941	0.5402637021284887	No Hit
GCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTCTGC	1155	0.32148612877815785	No Hit
CCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTCTGC	879	0.2446634694337669	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	809	0.22517946162903005	No Hit
GAACTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTCT	508	0.14139822806866165	No Hit
CTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTCTGCT	486	0.1352746827586015	Illumina Single End Adapter 2 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCT	399	0.111058844487	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCAAT	20	7.026805E-4	45.000004	15
TTTCGAG	30	2.1613214E-6	45.000004	1
CCTCGTG	20	7.026805E-4	45.000004	15
TCGATGT	20	7.026805E-4	45.000004	43
ATCCCGT	20	7.026805E-4	45.000004	13
TATTAGT	20	7.026805E-4	45.000004	30
TCATCGG	20	7.026805E-4	45.000004	2
TTGGACG	25	3.8854352E-5	45.0	1
TAAGTAG	25	3.8854352E-5	45.0	1
TACGGGT	25	3.8854352E-5	45.0	4
TATGACG	25	3.8854352E-5	45.0	2
GGATTAC	25	3.8854352E-5	45.0	8
TAGGGCG	120	0.0	41.250004	5
CGAAAGG	50	1.0768417E-9	40.5	2
GTAGGGC	185	0.0	40.135136	4
ATAACGG	45	1.9219442E-8	40.0	2
CACGTAG	45	1.9219442E-8	40.0	1
AGGGACC	210	0.0	39.642853	6
CGCGAGG	40	3.449386E-7	39.375004	2
GTGTACG	40	3.449386E-7	39.375004	1