SRR2935755.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935755.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	821712
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCGTCTTCTGC	5167	0.6288091204704325	No Hit
GCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCGTCTTCTGC	3458	0.42082870884202733	No Hit
GAATCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCGTCTTC	3145	0.38273750413770274	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGC	3047	0.3708111844539206	No Hit
CTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCGTCTTCTGCT	2477	0.3014438148645754	Illumina Single End Adapter 2 (95% over 21bp)
GAATGATACCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCG	2414	0.2937768950678583	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1296	0.15771949296103743	No Hit
TCTGTCTCTTATACACATCTGACGCATCGTGGTTCGTATGCCGTCTTCTGC	1193	0.14518468757910313	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGCGA	20	7.0321123E-4	45.0	23
CTCGTAG	35	1.211356E-7	45.0	1
CTATCGG	20	7.0321123E-4	45.0	2
TTTCGCG	35	1.211356E-7	45.0	1
CACGATA	25	3.889831E-5	45.0	11
CGCGATC	20	7.0321123E-4	45.0	25
TGCGGAC	20	7.0321123E-4	45.0	31
TTATCGG	35	1.211356E-7	45.0	2
AATGCGT	25	3.889831E-5	45.0	4
TCTCGAG	20	7.0321123E-4	45.0	1
CATACCG	20	7.0321123E-4	45.0	1
CGTGTCG	20	7.0321123E-4	45.0	2
TAGATCG	20	7.0321123E-4	45.0	1
AGTTACG	70	0.0	45.0	1
ACGTATA	25	3.889831E-5	45.0	38
ATACGTT	20	7.0321123E-4	45.0	30
TTACCGC	20	7.0321123E-4	45.0	27
TCGACCG	20	7.0321123E-4	45.0	17
TGTCGCG	20	7.0321123E-4	45.0	22
TCGCGGA	20	7.0321123E-4	45.0	3