SRR2935752.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935752.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	592235
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGC	6578	1.1107077427034877	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTC	5858	0.9891343807779007	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCG	5488	0.9266591808994741	No Hit
GCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTGC	2819	0.4759934823169856	No Hit
CCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTGC	1933	0.32639070639188833	No Hit
GAACTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCT	1312	0.22153368173106958	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCT	1284	0.21680582876729676	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1172	0.19789441691220547	No Hit
CTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTGCT	1077	0.18185348721369052	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCCGAGAAT	1016	0.17155352182832828	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCCGAGAATCGTA	953	0.16091585265983943	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTC	951	0.1605781488767128	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	742	0.1252881035399799	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTTACG	25	3.8885075E-5	45.0	1
TCGTTTA	20	7.0305134E-4	45.0	38
CGAACGT	25	3.8885075E-5	45.0	37
CGACGGT	35	1.210592E-7	45.0	28
TTGTACG	35	1.210592E-7	45.0	1
TAACGCC	35	1.210592E-7	45.0	12
CCGCTAG	25	3.8885075E-5	45.0	1
TATTGCG	20	7.0305134E-4	45.0	1
TGTTACG	25	3.8885075E-5	45.0	1
GTATCCG	20	7.0305134E-4	45.0	1
ATGGTCG	20	7.0305134E-4	45.0	44
CATCGTT	20	7.0305134E-4	45.0	36
CGGTCTA	35	1.210592E-7	45.0	31
CCGAACG	25	3.8885075E-5	45.0	36
TCGACAC	20	7.0305134E-4	45.0	42
ACGACAC	20	7.0305134E-4	45.0	34
TCCAACG	30	2.1637134E-6	44.999996	38
TACACGG	30	2.1637134E-6	44.999996	2
CGAGTAC	65	0.0	41.53846	27
CCGAGTA	65	0.0	41.53846	26