SRR2935751.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935751.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1292176
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9937	0.7690128898849693	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTC	4008	0.31017446539790244	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTT	3750	0.2902081450204926	No Hit
CCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC	3362	0.2601812756157056	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTC	3248	0.2513589480070826	No Hit
GCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC	2782	0.2152957491858694	No Hit
CGCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTG	2642	0.20446131177177104	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCT	2325	0.1799290499127054	No Hit
CTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGCT	2121	0.1641417268235906	No Hit
CGTCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCT	1922	0.14874134792783644	No Hit
GAACTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCT	1411	0.10919565136637735	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTACGCG	25	3.8910766E-5	45.0	1
TATAGCG	40	6.8157533E-9	45.0	1
CGTTTTT	5840	0.0	42.803936	1
TGCAACG	45	1.9286745E-8	40.0	1
TAACGCG	40	3.4586628E-7	39.375	1
TAAGACG	40	3.4586628E-7	39.375	1
ACGGGTA	110	0.0	38.86364	5
CGCGTAA	30	1.1400004E-4	37.499996	13
CGTTTCT	525	0.0	36.85714	1
TGCGACG	55	2.750312E-9	36.818184	1
CGTTAGG	190	0.0	36.71053	2
TTTACGG	155	0.0	36.290325	2
CGCGGAA	25	0.0021072056	36.0	4
GCGAAGT	25	0.0021072056	36.0	43
AATTCGC	25	0.0021072056	36.0	16
TACAGCG	50	4.879803E-8	36.0	1
CGTTCTG	345	0.0	35.869564	1
TAGTAGG	575	0.0	35.217392	2
TTACGGG	475	0.0	35.05263	3
ATAGGGA	1535	0.0	35.032578	4