SRR2935750.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935750.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	552467
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGC	1624	0.2939542090296796	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTC	1449	0.2622781089187227	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCG	1414	0.2559428888965314	No Hit
GCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGC	1252	0.22661987050810276	No Hit
CCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGC	1063	0.19240968238826936	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	955	0.17286100346265026	No Hit
CTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGCT	664	0.12018817413528772	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGGGTA	25	3.888165E-5	45.000004	5
TATACGA	25	3.888165E-5	45.000004	13
GTACGAG	35	1.2103919E-7	45.000004	1
ACCGGTA	20	7.0301036E-4	45.0	41
CCAATCG	20	7.0301036E-4	45.0	12
TACGCGT	20	7.0301036E-4	45.0	21
TACGCGG	40	6.8048394E-9	45.0	2
ATCGGTT	20	7.0301036E-4	45.0	30
CGTAAGG	90	0.0	40.0	2
TAGGGAT	245	0.0	39.489796	5
TAACGCG	40	3.453879E-7	39.375	1
CCGAACG	40	3.453879E-7	39.375	1
TATTGCG	35	6.2423987E-6	38.57143	1
TAGCACG	35	6.2423987E-6	38.57143	1
TTCGGTG	35	6.2423987E-6	38.57143	34
TCACGAC	65	9.094947E-12	38.07692	25
GGCGATA	125	0.0	37.8	8
CGTTTTT	585	0.0	37.69231	1
CTATACG	30	1.13915434E-4	37.500004	12
TAACGTG	30	1.13915434E-4	37.500004	42