Basic Statistics
Measure | Value |
---|---|
Filename | SRR2935750.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 552467 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGC | 1624 | 0.2939542090296796 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTC | 1449 | 0.2622781089187227 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCG | 1414 | 0.2559428888965314 | No Hit |
GCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGC | 1252 | 0.22661987050810276 | No Hit |
CCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGC | 1063 | 0.19240968238826936 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 955 | 0.17286100346265026 | No Hit |
CTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGCT | 664 | 0.12018817413528772 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACGGGTA | 25 | 3.888165E-5 | 45.000004 | 5 |
TATACGA | 25 | 3.888165E-5 | 45.000004 | 13 |
GTACGAG | 35 | 1.2103919E-7 | 45.000004 | 1 |
ACCGGTA | 20 | 7.0301036E-4 | 45.0 | 41 |
CCAATCG | 20 | 7.0301036E-4 | 45.0 | 12 |
TACGCGT | 20 | 7.0301036E-4 | 45.0 | 21 |
TACGCGG | 40 | 6.8048394E-9 | 45.0 | 2 |
ATCGGTT | 20 | 7.0301036E-4 | 45.0 | 30 |
CGTAAGG | 90 | 0.0 | 40.0 | 2 |
TAGGGAT | 245 | 0.0 | 39.489796 | 5 |
TAACGCG | 40 | 3.453879E-7 | 39.375 | 1 |
CCGAACG | 40 | 3.453879E-7 | 39.375 | 1 |
TATTGCG | 35 | 6.2423987E-6 | 38.57143 | 1 |
TAGCACG | 35 | 6.2423987E-6 | 38.57143 | 1 |
TTCGGTG | 35 | 6.2423987E-6 | 38.57143 | 34 |
TCACGAC | 65 | 9.094947E-12 | 38.07692 | 25 |
GGCGATA | 125 | 0.0 | 37.8 | 8 |
CGTTTTT | 585 | 0.0 | 37.69231 | 1 |
CTATACG | 30 | 1.13915434E-4 | 37.500004 | 12 |
TAACGTG | 30 | 1.13915434E-4 | 37.500004 | 42 |