FastQCFastQC Report
Sat 14 Jan 2017
SRR2935750.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2935750.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences552467
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGC16240.2939542090296796No Hit
GAATCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTC14490.2622781089187227No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCG14140.2559428888965314No Hit
GCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGC12520.22661987050810276No Hit
CCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGC10630.19240968238826936No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT9550.17286100346265026No Hit
CTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGCT6640.12018817413528772No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGGGTA253.888165E-545.0000045
TATACGA253.888165E-545.00000413
GTACGAG351.2103919E-745.0000041
ACCGGTA207.0301036E-445.041
CCAATCG207.0301036E-445.012
TACGCGT207.0301036E-445.021
TACGCGG406.8048394E-945.02
ATCGGTT207.0301036E-445.030
CGTAAGG900.040.02
TAGGGAT2450.039.4897965
TAACGCG403.453879E-739.3751
CCGAACG403.453879E-739.3751
TATTGCG356.2423987E-638.571431
TAGCACG356.2423987E-638.571431
TTCGGTG356.2423987E-638.5714334
TCACGAC659.094947E-1238.0769225
GGCGATA1250.037.88
CGTTTTT5850.037.692311
CTATACG301.13915434E-437.50000412
TAACGTG301.13915434E-437.50000442