SRR2935749.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935749.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	334394
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGC	5231	1.56432232635753	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCG	4626	1.3833980274765696	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTC	4519	1.3513998456910112	No Hit
GCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTGC	2555	0.7640687332906692	No Hit
CCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTGC	1576	0.47130032237420527	No Hit
CTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTGCT	1058	0.31639323672075453	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCT	1035	0.309515122878999	No Hit
GAACTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCT	966	0.2888807813537324	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTAAGTCGT	938	0.2805074253724648	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTA	855	0.2556864058565644	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	782	0.23385587061968816	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTC	674	0.2015586404062274	No Hit
TCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTGC	522	0.15610327936506038	No Hit
GCCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTG	428	0.12799272714223342	No Hit
ACTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTGC	378	0.11304030574711268	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	374	0.11184411203550304	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCC	335	0.10018122334730886	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCC	35	1.208482E-7	45.000004	16
AGCCCGA	30	2.1608685E-6	45.000004	25
TAACCCG	30	2.1608685E-6	45.000004	37
GTGCTAG	30	2.1608685E-6	45.000004	1
GACGGTC	60	0.0	45.000004	29
CGGTCTA	60	0.0	45.000004	31
TCGAGTG	30	2.1608685E-6	45.000004	2
ACCCGTA	30	2.1608685E-6	45.000004	39
CGGTATT	30	2.1608685E-6	45.000004	28
GGTTAGC	30	2.1608685E-6	45.000004	15
ATCGAAT	30	2.1608685E-6	45.000004	11
CTTCGCA	20	7.026105E-4	45.0	40
AACCGTT	20	7.026105E-4	45.0	32
AAGTACC	20	7.026105E-4	45.0	41
CTGTCGG	25	3.8848528E-5	45.0	2
ACCGGAA	20	7.026105E-4	45.0	35
CAAAATC	25	3.8848528E-5	45.0	13
TTGTGCG	20	7.026105E-4	45.0	1
GATCGAA	40	6.7902874E-9	45.0	10
ACGTTAG	25	3.8848528E-5	45.0	1