Basic Statistics
Measure | Value |
---|---|
Filename | SRR2935749.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 334394 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGC | 5231 | 1.56432232635753 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCG | 4626 | 1.3833980274765696 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTC | 4519 | 1.3513998456910112 | No Hit |
GCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTGC | 2555 | 0.7640687332906692 | No Hit |
CCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTGC | 1576 | 0.47130032237420527 | No Hit |
CTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTGCT | 1058 | 0.31639323672075453 | No Hit |
GAATGACTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCT | 1035 | 0.309515122878999 | No Hit |
GAACTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCT | 966 | 0.2888807813537324 | No Hit |
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTAAGTCGT | 938 | 0.2805074253724648 | No Hit |
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTA | 855 | 0.2556864058565644 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 782 | 0.23385587061968816 | No Hit |
GAATGATCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTC | 674 | 0.2015586404062274 | No Hit |
TCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTGC | 522 | 0.15610327936506038 | No Hit |
GCCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTG | 428 | 0.12799272714223342 | No Hit |
ACTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTGC | 378 | 0.11304030574711268 | No Hit |
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC | 374 | 0.11184411203550304 | No Hit |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCC | 335 | 0.10018122334730886 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTATGCC | 35 | 1.208482E-7 | 45.000004 | 16 |
AGCCCGA | 30 | 2.1608685E-6 | 45.000004 | 25 |
TAACCCG | 30 | 2.1608685E-6 | 45.000004 | 37 |
GTGCTAG | 30 | 2.1608685E-6 | 45.000004 | 1 |
GACGGTC | 60 | 0.0 | 45.000004 | 29 |
CGGTCTA | 60 | 0.0 | 45.000004 | 31 |
TCGAGTG | 30 | 2.1608685E-6 | 45.000004 | 2 |
ACCCGTA | 30 | 2.1608685E-6 | 45.000004 | 39 |
CGGTATT | 30 | 2.1608685E-6 | 45.000004 | 28 |
GGTTAGC | 30 | 2.1608685E-6 | 45.000004 | 15 |
ATCGAAT | 30 | 2.1608685E-6 | 45.000004 | 11 |
CTTCGCA | 20 | 7.026105E-4 | 45.0 | 40 |
AACCGTT | 20 | 7.026105E-4 | 45.0 | 32 |
AAGTACC | 20 | 7.026105E-4 | 45.0 | 41 |
CTGTCGG | 25 | 3.8848528E-5 | 45.0 | 2 |
ACCGGAA | 20 | 7.026105E-4 | 45.0 | 35 |
CAAAATC | 25 | 3.8848528E-5 | 45.0 | 13 |
TTGTGCG | 20 | 7.026105E-4 | 45.0 | 1 |
GATCGAA | 40 | 6.7902874E-9 | 45.0 | 10 |
ACGTTAG | 25 | 3.8848528E-5 | 45.0 | 1 |