FastQCFastQC Report
Sat 14 Jan 2017
SRR2935749.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2935749.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences334394
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGC52311.56432232635753No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCG46261.3833980274765696No Hit
GAATCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTC45191.3513998456910112No Hit
GCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTGC25550.7640687332906692No Hit
CCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTGC15760.47130032237420527No Hit
CTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTGCT10580.31639323672075453No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCT10350.309515122878999No Hit
GAACTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCT9660.2888807813537324No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTAAGTCGT9380.2805074253724648No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTA8550.2556864058565644No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7820.23385587061968816No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTC6740.2015586404062274No Hit
TCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTGC5220.15610327936506038No Hit
GCCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTG4280.12799272714223342No Hit
ACTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTGC3780.11304030574711268No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC3740.11184411203550304No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCC3350.10018122334730886No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATGCC351.208482E-745.00000416
AGCCCGA302.1608685E-645.00000425
TAACCCG302.1608685E-645.00000437
GTGCTAG302.1608685E-645.0000041
GACGGTC600.045.00000429
CGGTCTA600.045.00000431
TCGAGTG302.1608685E-645.0000042
ACCCGTA302.1608685E-645.00000439
CGGTATT302.1608685E-645.00000428
GGTTAGC302.1608685E-645.00000415
ATCGAAT302.1608685E-645.00000411
CTTCGCA207.026105E-445.040
AACCGTT207.026105E-445.032
AAGTACC207.026105E-445.041
CTGTCGG253.8848528E-545.02
ACCGGAA207.026105E-445.035
CAAAATC253.8848528E-545.013
TTGTGCG207.026105E-445.01
GATCGAA406.7902874E-945.010
ACGTTAG253.8848528E-545.01