FastQCFastQC Report
Sat 14 Jan 2017
SRR2935744.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2935744.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472197
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTC62421.3219058994445114No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGC54091.1454964771059537No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCG49741.0533739096182315No Hit
GAACTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCT46900.9932295207296955No Hit
GCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGC25440.5387581877902655No Hit
CCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGC15710.33270012304186597No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCT10190.2157997615402046No Hit
CTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGCT9540.20203432042134956No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT9170.19419860778446285No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCACGATT9020.19102196752626552No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTC8720.18466868700987088No Hit
GAATGCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTT8720.18466868700987088No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGCACGATTCGTA7920.16772660563281852No Hit
TCGTAAGGTGGGAGGCATGGGGGTTAAGATTGTATAAACCATAGATCCTGT4930.10440557648608526No Hit
TCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGC4740.10038183215903532No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGTAG302.1627748E-645.0000041
TCGTAAG1200.045.0000041
CTAGCGG650.045.0000042
CGGGTTC253.887303E-545.06
CGAAAGG800.045.02
CCGCTCG207.0290605E-445.019
ATCACGG207.0290605E-445.02
CCGTAAT207.0290605E-445.041
CGCTCGG207.0290605E-445.020
GGGCGTA207.0290605E-445.08
CGCTAGG207.0290605E-445.02
AACGACG253.887303E-545.01
GCGATAT253.887303E-545.09
CCGCGTT207.0290605E-445.045
CGGTAAT207.0290605E-445.06
GCGCTAG207.0290605E-445.01
CAATCGG207.0290605E-445.02
GCCGTAA207.0290605E-445.040
TCGAAGA253.887303E-545.023
TAACTCG207.0290605E-445.027