Basic Statistics
Measure | Value |
---|---|
Filename | SRR2935744.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 472197 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAATCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTC | 6242 | 1.3219058994445114 | No Hit |
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGC | 5409 | 1.1454964771059537 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCG | 4974 | 1.0533739096182315 | No Hit |
GAACTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCT | 4690 | 0.9932295207296955 | No Hit |
GCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGC | 2544 | 0.5387581877902655 | No Hit |
CCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGC | 1571 | 0.33270012304186597 | No Hit |
GAATGACTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCT | 1019 | 0.2157997615402046 | No Hit |
CTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGCT | 954 | 0.20203432042134956 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 917 | 0.19419860778446285 | No Hit |
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCACGATT | 902 | 0.19102196752626552 | No Hit |
GAATGATCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTC | 872 | 0.18466868700987088 | No Hit |
GAATGCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTT | 872 | 0.18466868700987088 | No Hit |
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGCACGATTCGTA | 792 | 0.16772660563281852 | No Hit |
TCGTAAGGTGGGAGGCATGGGGGTTAAGATTGTATAAACCATAGATCCTGT | 493 | 0.10440557648608526 | No Hit |
TCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGC | 474 | 0.10038183215903532 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGTAG | 30 | 2.1627748E-6 | 45.000004 | 1 |
TCGTAAG | 120 | 0.0 | 45.000004 | 1 |
CTAGCGG | 65 | 0.0 | 45.000004 | 2 |
CGGGTTC | 25 | 3.887303E-5 | 45.0 | 6 |
CGAAAGG | 80 | 0.0 | 45.0 | 2 |
CCGCTCG | 20 | 7.0290605E-4 | 45.0 | 19 |
ATCACGG | 20 | 7.0290605E-4 | 45.0 | 2 |
CCGTAAT | 20 | 7.0290605E-4 | 45.0 | 41 |
CGCTCGG | 20 | 7.0290605E-4 | 45.0 | 20 |
GGGCGTA | 20 | 7.0290605E-4 | 45.0 | 8 |
CGCTAGG | 20 | 7.0290605E-4 | 45.0 | 2 |
AACGACG | 25 | 3.887303E-5 | 45.0 | 1 |
GCGATAT | 25 | 3.887303E-5 | 45.0 | 9 |
CCGCGTT | 20 | 7.0290605E-4 | 45.0 | 45 |
CGGTAAT | 20 | 7.0290605E-4 | 45.0 | 6 |
GCGCTAG | 20 | 7.0290605E-4 | 45.0 | 1 |
CAATCGG | 20 | 7.0290605E-4 | 45.0 | 2 |
GCCGTAA | 20 | 7.0290605E-4 | 45.0 | 40 |
TCGAAGA | 25 | 3.887303E-5 | 45.0 | 23 |
TAACTCG | 20 | 7.0290605E-4 | 45.0 | 27 |