SRR2935743.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935743.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	852529
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTC	5464	0.6409166139802869	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5016	0.5883670819409076	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGC	2963	0.3475541594479484	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCG	2921	0.3426276408192566	No Hit
CCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCTGC	1870	0.21934737703937346	No Hit
GCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCTGC	1819	0.2133651758473905	No Hit
GAACTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCT	1714	0.20104887927566098	No Hit
CGCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCTG	1196	0.14028848285512868	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTT	1134	0.13301600297467886	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTC	1040	0.12198998509141624	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTT	1022	0.11987861996483405	No Hit
CTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCTGCT	998	0.11706346646272443	Illumina Single End Adapter 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGCG	20	7.032261E-4	45.0	1
TAACGCC	25	3.8899547E-5	45.0	12
TATAGCG	20	7.032261E-4	45.0	1
CGTTTTT	2610	0.0	42.327583	1
CGACGGT	80	0.0	42.1875	28
ATTCGAC	45	1.9272193E-8	40.0	42
TTCGACT	45	1.9272193E-8	40.0	43
CTCACGA	70	0.0	38.571426	24
CGGTCTA	70	0.0	38.571426	31
GATTACG	35	6.2463914E-6	38.571426	1
ATCACGG	55	2.746674E-9	36.81818	2
TCACGAC	75	1.8189894E-12	36.000004	25
TCGTTAG	25	0.0021068037	36.0	1
CTATCGG	25	0.0021068037	36.0	2
GTCGTAA	25	0.0021068037	36.0	9
TTCGCAC	25	0.0021068037	36.0	37
TCGAACG	25	0.0021068037	36.0	1
ATGGGCG	265	0.0	35.660378	5
TCGATGG	150	0.0	34.500004	2
CGAATAT	85	0.0	34.411766	14