SRR2935742.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935742.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	520679
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTTC	6580	1.2637344697980906	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGC	5065	0.9727682506880438	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCG	5048	0.9695032832128816	No Hit
GCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTTCTGC	2492	0.4786058204767236	TruSeq Adapter, Index 22 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTTCT	1677	0.3220794385792398	No Hit
CCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTTCTGC	1505	0.2890456500070101	TruSeq Adapter, Index 22 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1178	0.22624304033771286	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCT	1064	0.20434855256309548	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTC	995	0.19109662575214287	No Hit
CTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTTCTGCT	872	0.16747362578479255	TruSeq Adapter, Index 20 (95% over 22bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCGTATTGT	867	0.16651334123327424	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTT	761	0.14615530874108615	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCGTATTGTCGTA	724	0.1390492030598507	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATATGCG	45	3.8380676E-10	45.000004	1
TAGTGCG	35	1.21021E-7	45.000004	1
CTATGCG	25	3.8878563E-5	45.0	1
AGTCCGA	20	7.0297276E-4	45.0	11
CGTGCTT	20	7.0297276E-4	45.0	42
GGCACGC	80	0.0	45.0	8
CCGTGTA	20	7.0297276E-4	45.0	26
CGTGTAT	20	7.0297276E-4	45.0	27
CAACCGG	30	2.1632059E-6	44.999996	2
ACTACCG	30	2.1632059E-6	44.999996	13
CACGGGC	80	0.0	42.1875	4
ATGACGG	110	0.0	40.909092	2
TCGAATG	55	6.002665E-11	40.909092	44
GGGCACG	100	0.0	40.5	7
CGGTCTA	45	1.9248546E-8	40.000004	31
CGATGAA	360	0.0	39.375004	19
TATGCGG	110	0.0	38.863636	2
CGGGTGA	105	0.0	38.57143	6
CGCGAGG	95	0.0	37.894737	2
TAACGGG	150	0.0	37.500004	3