SRR2935741.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935741.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1196389
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12897	1.0779938632000128	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTC	7147	0.5973809521819408	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTT	4051	0.3386022439189929	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCT	2704	0.22601344545962895	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTC	2576	0.21531458413609622	No Hit
CGCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTG	2466	0.20612025018618527	No Hit
GAACTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCT	2415	0.2018574226275902	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCG	2409	0.20135591350304957	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGC	2207	0.1844717729768495	No Hit
CCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTGC	2140	0.17887158775281284	No Hit
GCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTGC	2028	0.1695100840947217	No Hit
CGTCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCT	1551	0.12964010869374426	No Hit
CTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTGCT	1421	0.11877407766203132	No Hit

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTCCGT	20	7.033402E-4	45.0	9
TATAGCG	40	6.8157533E-9	45.0	1
TATCGCG	20	7.033402E-4	45.0	1
CGTTTTT	6660	0.0	43.91892	1
CTATGCG	60	3.6379788E-12	41.249996	1
CATAGCG	50	1.0822987E-9	40.5	1
CGTTTTC	310	0.0	39.919353	1
CGTTATT	160	0.0	39.375	1
ACGGGTA	75	0.0	39.0	5
TATGCGG	215	0.0	37.67442	2
TTTAACG	60	1.5643309E-10	37.499996	1
CCGTAAG	30	1.13994996E-4	37.499996	1
GTTTTTT	7965	0.0	37.0339	2
TACGTAG	80	0.0	36.5625	1
GTACGAG	80	0.0	36.5625	1
CGTTTCT	465	0.0	36.290325	1
CGTAAGG	155	0.0	36.29032	2
CTCACGA	100	0.0	36.0	24
TAACGAG	25	0.0021071432	36.0	1
ATATACG	25	0.0021071432	36.0	1