SRR2935740.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935740.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	488565
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTC	3733	0.7640743810956577	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGC	3398	0.6955062274211211	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCG	3230	0.6611198100559803	No Hit
GCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGC	2889	0.5913235700469743	No Hit
CCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGC	2504	0.5125213635851934	No Hit
CTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGCT	1551	0.31746031746031744	No Hit
GAACTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCT	969	0.19833594301679408	No Hit
TCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGC	848	0.17356953527166294	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	837	0.1713180436584692	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCT	708	0.14491418746737894	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCC	623	0.1275162977290637	No Hit
ACTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGC	617	0.12628821139459437	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTC	598	0.12239927133544154	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTTGGTCAT	537	0.10991372693500354	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTTGGTCATCGTA	535	0.10950436482351376	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCACC	20	7.029301E-4	45.0	27
ACGCCGC	20	7.029301E-4	45.0	14
TTAATCG	20	7.029301E-4	45.0	20
TCCGAGG	35	1.21001E-7	45.0	2
CGTTGGA	20	7.029301E-4	45.0	33
GCGCCCT	20	7.029301E-4	45.0	32
TCGATCA	40	6.8012014E-9	45.0	17
GCCGCCG	20	7.029301E-4	45.0	16
TGTTGCG	35	1.21001E-7	45.0	1
CTCGCGG	20	7.029301E-4	45.0	2
ACTCGCG	20	7.029301E-4	45.0	1
ACATGCG	25	3.8875012E-5	45.0	1
GCGGAAT	20	7.029301E-4	45.0	5
GTAAGCG	25	3.8875012E-5	45.0	1
CGCCGCA	20	7.029301E-4	45.0	18
TGTCGTC	35	1.21001E-7	45.0	17
TGTCGCC	20	7.029301E-4	45.0	33
TGAGACG	25	3.8875012E-5	45.0	1
CTAAGCG	30	2.1629294E-6	44.999996	1
CGGTAAT	30	2.1629294E-6	44.999996	6