SRR2935739.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935739.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	590086
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGC	4784	0.8107292835281638	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTC	4614	0.7819199235365693	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCG	4459	0.7556525658971743	No Hit
GCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	2818	0.4775575085665479	No Hit
CCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	2552	0.43247933352087664	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1223	0.20725792511600005	No Hit
CTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGCT	1195	0.20251285405856095	Illumina Single End Adapter 1 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCT	1137	0.19268377829672284	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCT	886	0.15014760560325105	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTC	691	0.11710157502465741	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGATGGGTT	675	0.11439010584897795	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTA	648	0.10981450161501882	No Hit
TCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	637	0.10795036655673919	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAACGTT	20	7.0304924E-4	45.0	30
GAACGTA	20	7.0304924E-4	45.0	1
CTATTCG	20	7.0304924E-4	45.0	26
TTACGTC	20	7.0304924E-4	45.0	18
CGGTCTA	40	6.8048394E-9	45.0	31
ACTCAAC	20	7.0304924E-4	45.0	39
CAATAGA	40	6.8048394E-9	45.0	12
CGTAAGG	90	0.0	40.0	2
ATTAGCG	40	3.4544064E-7	39.375	1
GCGATAC	40	3.4544064E-7	39.375	9
CGGGCTC	110	0.0	38.86364	6
TTGCACG	35	6.243121E-6	38.57143	1
CCCGCAT	35	6.243121E-6	38.57143	42
ACACGGT	30	1.1392485E-4	37.500004	36
GCGCGAA	30	1.1392485E-4	37.500004	12
AGTTACG	30	1.1392485E-4	37.500004	1
CGATACG	30	1.1392485E-4	37.500004	10
TCGCAGG	55	2.744855E-9	36.818184	2
TACGGCT	695	0.0	36.582733	7
AGGGCGC	125	0.0	36.000004	6