SRR2935738.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935738.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1413544
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTC	14478	1.0242341235928984	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGC	8951	0.6332310844232653	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCG	8257	0.5841346289892638	No Hit
GCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGC	5638	0.3988556422721896	TruSeq Adapter, Index 19 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCT	4656	0.32938486527479865	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4090	0.2893436638689705	No Hit
CCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGC	3722	0.26330980853797264	TruSeq Adapter, Index 19 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGCT	2534	0.17926573208899052	TruSeq Adapter, Index 16 (95% over 23bp)
GAATGCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTT	2143	0.1516047607998053	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCT	2095	0.1482090405392404	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTC	1861	0.13165490426898632	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTGCGA	20	7.033837E-4	45.0	14
CCGCTAG	20	7.033837E-4	45.0	1
CGGATCG	20	7.033837E-4	45.0	2
CGAATAC	20	7.033837E-4	45.0	44
TTACGCG	20	7.033837E-4	45.0	1
ACCGTAG	20	7.033837E-4	45.0	42
TCGCGCA	20	7.033837E-4	45.0	34
CGTTTTT	2820	0.0	41.010635	1
GCCGATT	90	0.0	40.0	9
TACGCGG	85	0.0	39.705883	2
CGACCGG	40	3.458972E-7	39.375	2
TACGAAG	40	3.458972E-7	39.375	1
TGTTACG	80	0.0	39.375	1
ACGCTAG	40	3.458972E-7	39.375	1
CGTAAGG	200	0.0	39.375	2
CGAACGG	75	0.0	39.0	2
CTGTACG	75	0.0	39.0	1
ACTTCGA	35	6.2493073E-6	38.57143	29
GTAATCG	35	6.2493073E-6	38.57143	1
TTACGAG	35	6.2493073E-6	38.57143	1