SRR2935737.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935737.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	682579
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3015	0.4417071137553309	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTC	2488	0.3644999333410492	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGC	1385	0.20290691626903262	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCG	1385	0.20290691626903262	No Hit
GCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC	1312	0.19221218349817384	No Hit
CCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC	1176	0.17228774984287534	No Hit
GAACTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCT	717	0.10504278625624286	No Hit
CTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGCT	692	0.10138020654019535	Illumina Single End Adapter 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	1360	0.0	40.036762	1
ACGTAGG	80	0.0	39.375	2
AGGGCGA	635	0.0	38.622047	6
TTAACCG	35	6.2445597E-6	38.57143	1
AATCGAT	35	6.2445597E-6	38.57143	33
CGTTAGG	90	0.0	37.5	2
CGATTTA	30	1.1394364E-4	37.499996	10
TCAATCG	30	1.1394364E-4	37.499996	31
ACGTATG	30	1.1394364E-4	37.499996	1
AATAGCG	30	1.1394364E-4	37.499996	1
GCGTATG	60	1.546141E-10	37.499996	1
TACGTAG	30	1.1394364E-4	37.499996	1
CACGACC	255	0.0	37.058823	27
CTATGCG	55	2.746674E-9	36.81818	1
TTAACGG	55	2.746674E-9	36.81818	2
GTAGGGA	525	0.0	36.42857	4
TACGGGA	235	0.0	36.38298	4
CCCTAGG	25	0.0021065103	36.0	2
ATAGACG	25	0.0021065103	36.0	1
TATGCGT	25	0.0021065103	36.0	13