SRR2935732.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935732.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	944178
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4086	0.43275738261217694	No Hit
GAATCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTC	2267	0.24010303141992292	No Hit
CCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTGC	1715	0.18163947899654515	TruSeq Adapter, Index 15 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTGC	1445	0.15304317618076252	TruSeq Adapter, Index 15 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTG	1189	0.12592964462209455	TruSeq Adapter, Index 21 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTGCT	1063	0.11258470330806267	TruSeq Adapter, Index 21 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCCGGT	20	7.032646E-4	45.0	40
CAGTACG	25	3.890275E-5	45.0	1
GCCGATT	30	2.1650885E-6	44.999996	9
CTCGACG	30	2.1650885E-6	44.999996	1
CGTTTTT	2410	0.0	40.79875	1
AGTACGG	200	0.0	39.375	2
GGCGATA	350	0.0	39.214287	8
TATGCGG	190	0.0	39.078945	2
GCGATAA	100	0.0	38.25	9
TACGCGG	65	9.094947E-12	38.076927	2
CGCGAGG	90	0.0	37.500004	2
TAGCGCG	30	1.13976756E-4	37.499996	1
GTTAACG	30	1.13976756E-4	37.499996	1
ACGTAGT	30	1.13976756E-4	37.499996	12
AGTAACG	30	1.13976756E-4	37.499996	1
ACACGAC	115	0.0	37.173912	26
CACGACC	115	0.0	37.173912	27
CGGAAGG	195	0.0	36.92308	2
TTATGCG	55	2.748493E-9	36.818184	1
CTCGATG	55	2.748493E-9	36.818184	1