SRR2935727.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935727.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	660106
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9639	1.460220025268669	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTC	7522	1.1395139568493544	No Hit
GAACTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTCT	2519	0.38160537853011484	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCG	2433	0.3685771679093964	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGC	2368	0.35873026453327195	No Hit
GCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTCTGC	1553	0.23526524527878856	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTT	1339	0.20284620954816346	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTT	1208	0.18300091197474344	No Hit
CGCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTCTG	983	0.14891547721123577	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTC	925	0.14012900958330934	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTAGACGGT	874	0.13240297770358095	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCT	713	0.10801295549502657	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCT	678	0.10271077675403648	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTAGCG	20	7.031102E-4	45.0	1
GATCACG	20	7.031102E-4	45.0	1
CGTTCAT	20	7.031102E-4	45.0	17
TCGTAAG	40	6.8066583E-9	45.0	1
TATAGCG	20	7.031102E-4	45.0	1
AATTGCG	30	2.1640935E-6	44.999996	1
CGTTTTT	5150	0.0	43.907764	1
CGTAAGG	115	0.0	43.04348	2
CTCACGA	65	0.0	41.538464	24
CGGTCTA	65	0.0	41.538464	31
GTACGGT	55	6.002665E-11	40.909092	32
GCGTAAG	50	1.0804797E-9	40.500004	1
ACGGGCT	195	0.0	40.384617	5
CTAGTTG	40	3.455243E-7	39.375	1
CGACGAA	35	6.2442487E-6	38.571426	19
TACGGTT	60	1.546141E-10	37.499996	33
AACGGGC	120	0.0	37.499996	4
TAACACG	30	1.13939575E-4	37.499996	1
TTGCACG	30	1.13939575E-4	37.499996	1
CGCCCCG	30	1.13939575E-4	37.499996	25