##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935727.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 660106 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.10667226172766 33.0 31.0 34.0 30.0 34.0 2 32.18822280058051 33.0 31.0 34.0 30.0 34.0 3 32.15190742092937 33.0 31.0 34.0 30.0 34.0 4 35.82752315537201 37.0 35.0 37.0 35.0 37.0 5 34.87009662084574 37.0 35.0 37.0 33.0 37.0 6 35.34030443595422 37.0 35.0 37.0 33.0 37.0 7 35.88952683356916 37.0 35.0 37.0 35.0 37.0 8 35.86336739856932 37.0 35.0 37.0 35.0 37.0 9 37.730267563088354 39.0 38.0 39.0 35.0 39.0 10 37.43816144679794 39.0 37.0 39.0 35.0 39.0 11 37.374182328292726 39.0 37.0 39.0 34.0 39.0 12 37.30582209523925 39.0 37.0 39.0 34.0 39.0 13 37.252726077326976 39.0 37.0 39.0 34.0 39.0 14 38.40328674485613 40.0 38.0 41.0 34.0 41.0 15 38.456775123995236 40.0 38.0 41.0 34.0 41.0 16 38.4873883891375 40.0 38.0 41.0 34.0 41.0 17 38.44926420908157 40.0 38.0 41.0 34.0 41.0 18 38.33397969417033 40.0 38.0 41.0 34.0 41.0 19 38.14783080293165 40.0 37.0 41.0 34.0 41.0 20 37.9566281778987 40.0 36.0 41.0 34.0 41.0 21 37.924350028631764 40.0 35.0 41.0 34.0 41.0 22 37.98875786616089 40.0 35.0 41.0 34.0 41.0 23 37.97346486776366 40.0 35.0 41.0 34.0 41.0 24 37.93644657070228 40.0 35.0 41.0 34.0 41.0 25 37.796047907457286 40.0 35.0 41.0 34.0 41.0 26 37.786404001781534 40.0 35.0 41.0 34.0 41.0 27 37.78082610974601 40.0 35.0 41.0 34.0 41.0 28 37.661283187851645 40.0 35.0 41.0 33.0 41.0 29 37.59291538025711 40.0 35.0 41.0 33.0 41.0 30 37.42282148624615 40.0 35.0 41.0 33.0 41.0 31 37.26181098187261 40.0 35.0 41.0 33.0 41.0 32 37.01404319912257 40.0 35.0 41.0 32.0 41.0 33 36.64639012522231 40.0 35.0 41.0 31.0 41.0 34 36.36457478041405 40.0 35.0 41.0 30.0 41.0 35 36.19253574425925 39.0 35.0 41.0 29.0 41.0 36 36.041456978121694 39.0 35.0 41.0 28.0 41.0 37 35.93782362226673 39.0 35.0 41.0 28.0 41.0 38 35.79478295910051 39.0 35.0 41.0 27.0 41.0 39 35.71281885030586 39.0 35.0 41.0 26.0 41.0 40 35.56309441210957 39.0 35.0 41.0 25.0 41.0 41 35.45819762280603 39.0 35.0 41.0 24.0 41.0 42 35.455126903860894 39.0 35.0 41.0 25.0 41.0 43 35.36674867369786 39.0 35.0 41.0 24.0 41.0 44 35.27870675315783 39.0 35.0 41.0 24.0 41.0 45 35.24719666235423 38.0 35.0 41.0 24.0 41.0 46 35.131628859607396 38.0 35.0 41.0 23.0 41.0 47 35.01220713036997 38.0 35.0 40.0 23.0 41.0 48 34.95835062853542 38.0 35.0 40.0 23.0 41.0 49 34.931800347216964 38.0 34.0 40.0 24.0 41.0 50 34.810256231574925 38.0 34.0 40.0 23.0 41.0 51 33.6851429921861 36.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 6.0 9 4.0 10 15.0 11 13.0 12 11.0 13 11.0 14 21.0 15 34.0 16 53.0 17 104.0 18 221.0 19 450.0 20 846.0 21 1408.0 22 2174.0 23 3147.0 24 4605.0 25 7487.0 26 10703.0 27 11633.0 28 11255.0 29 10602.0 30 11149.0 31 13050.0 32 16399.0 33 22542.0 34 38779.0 35 47184.0 36 46827.0 37 67158.0 38 119090.0 39 212959.0 40 164.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.97221658339721 16.507045838092672 20.39475478180777 23.12598279670235 2 33.71897846709468 25.971889363223482 24.470312343775092 15.838819825906747 3 28.576319560797813 25.24382447667496 31.387383238449583 14.79247272407765 4 25.09157620139796 23.463958818735172 34.64746571005263 16.796999269814243 5 24.214292855995858 28.68493847957752 29.806728010349854 17.29404065407677 6 23.667865464031536 32.785795008680424 29.66493260173366 13.88140692555438 7 74.47425110512555 4.85725019921043 16.458417284496733 4.210081411167297 8 76.26017639591217 5.422765434642315 14.050773663623723 4.266284505821792 9 70.71652128597529 5.496389973731492 15.887599870323857 7.899488869969369 10 36.877865070155394 24.48500695342869 23.17218749715955 15.464940479256361 11 28.156689986153737 23.517132096966247 30.295588890269137 18.030589026610876 12 24.785564742632243 20.47428746292262 34.53187821349905 20.20826958094609 13 24.070679557525608 20.700766240573483 36.93346220152521 18.2950920003757 14 20.154641830251503 25.14353755305966 35.0964845040039 19.60533611268493 15 19.240849196947156 23.436387489282023 37.64107582721563 19.681687486555187 16 22.872235671240677 24.022808458035527 32.86078296516014 20.24417290556365 17 22.96100929244697 24.50712461331968 31.657188390955394 20.874677703277957 18 24.02326293049904 23.169157680736124 32.358590892977794 20.44898849578704 19 22.746043817205116 25.782222855117208 30.11486034061196 21.356872987065714 20 23.39851478398924 25.556501531572202 31.411773260658137 19.633210423780422 21 23.12219552617307 26.11065495541625 32.49856841173993 18.268581106670748 22 21.86845749016067 21.982378587681374 33.93909463025635 22.210069291901604 23 21.259009916589154 24.229744919755312 33.26405153111773 21.247193632537805 24 22.09205794220928 23.871772109327896 32.835938470488074 21.20023147797475 25 21.608347750209813 26.49119989819817 30.68461731903664 21.21583503255538 26 20.81938355355049 23.615904112369833 32.23982208917961 23.32489024490006 27 22.08418041950838 23.480471318242827 32.01182840331705 22.423519858931748 28 20.41066131803074 24.662705686662445 32.623548339206124 22.303084656100687 29 21.609408185958014 23.524858128845974 33.705041311546935 21.16069237364908 30 21.56714224685126 24.182782765192258 34.14300127555271 20.107073712403768 31 22.17658982042278 24.826467264348455 31.739296416030154 21.257646499198614 32 25.296088809979008 25.062338472911925 30.12364680823989 19.51792590886918 33 23.718160416660357 25.536807724819955 29.479053364156666 21.26597849436303 34 21.69075875692692 25.25867057714973 31.184840010543763 21.86573065537959 35 23.835717293889164 25.07127643136102 30.22317627774933 20.869829997000483 36 24.520758787225084 27.240776481352995 28.181988953289324 20.056475778132604 37 23.556671201291916 26.077629956400944 29.565403132224215 20.800295710082924 38 23.674531060163066 26.903860895068366 28.104274162028524 21.317333882740044 39 24.24959021732873 25.119450512493447 27.747361787349305 22.883597482828517 40 24.441983560216087 24.375327598900785 30.213026392730864 20.969662448152267 41 22.33126194883852 25.0162852632759 29.407852678206226 23.244600109679357 42 22.87344759781005 25.112633425540746 30.157732243003398 21.856186733645806 43 23.263081989862233 24.368056039484568 29.917013328162444 22.451848642490752 44 23.147191511666307 23.891617406901318 29.489203249175134 23.471987832257245 45 21.72408673758457 24.11749022126749 29.153651080281044 25.00477196086689 46 23.41366386610635 24.557874038412013 29.03776060208512 22.990701493396514 47 21.022078272277483 24.642708898267855 31.97956085840759 22.355651971047074 48 21.552599128018834 24.427591932204827 30.185606554098886 23.834202385677454 49 22.321415045462395 23.526524527878856 31.44267738817705 22.709383038481697 50 21.054800289650448 23.502437487312644 32.135141931750354 23.30762029128655 51 20.62199101356449 23.30459047486313 30.775208830096982 25.2982096814754 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 172.0 1 425.0 2 678.0 3 8153.5 4 15629.0 5 10279.5 6 4930.0 7 4746.0 8 4562.0 9 4520.0 10 4478.0 11 4471.5 12 4465.0 13 4258.0 14 4051.0 15 3900.5 16 3750.0 17 3561.5 18 3373.0 19 3225.5 20 3078.0 21 3063.5 22 3049.0 23 3238.0 24 3427.0 25 3696.0 26 4408.0 27 4851.0 28 6045.0 29 7239.0 30 7959.0 31 8679.0 32 10416.5 33 12154.0 34 13777.5 35 15401.0 36 16751.0 37 18101.0 38 19921.5 39 21742.0 40 23604.0 41 25466.0 42 27740.0 43 30014.0 44 33210.0 45 36406.0 46 51624.0 47 66842.0 48 62895.5 49 58949.0 50 58184.5 51 57420.0 52 51391.0 53 45362.0 54 42102.5 55 38843.0 56 36395.0 57 33947.0 58 32579.0 59 31211.0 60 27935.5 61 24660.0 62 21920.5 63 19181.0 64 16989.5 65 14798.0 66 12546.0 67 10294.0 68 8463.0 69 6632.0 70 5819.5 71 5007.0 72 4074.5 73 3142.0 74 2567.5 75 1512.0 76 1031.0 77 812.0 78 593.0 79 439.0 80 285.0 81 213.5 82 142.0 83 102.0 84 62.0 85 44.0 86 26.0 87 20.0 88 14.0 89 10.0 90 6.0 91 5.5 92 5.0 93 3.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 660106.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.66617586125521 #Duplication Level Percentage of deduplicated Percentage of total 1 72.67591711315035 28.827757090882283 2 8.637949418358783 6.852688414184933 3 3.95566873616678 4.707187552129819 4 2.6602197056672754 4.220829706982989 5 1.9803286543927596 3.9276032334113045 6 1.5940108834925946 3.7936989617623227 7 1.3671857965491607 3.7961722568650504 8 1.1311700620530936 3.5895352488307983 9 0.9606778106170922 3.429577348374888 >10 4.977254503204418 29.317980081174916 >50 0.036155017973471176 1.0008405624021526 >100 0.016538997214647477 1.1024502714154247 >500 0.0038462784220110297 1.0731573774060452 >1k 0.0023077670532066176 1.7423169249327606 >5k 7.692556844022059E-4 2.6182049692444047 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9639 1.460220025268669 No Hit GAATCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTC 7522 1.1395139568493544 No Hit GAACTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTCT 2519 0.38160537853011484 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCG 2433 0.3685771679093964 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGC 2368 0.35873026453327195 No Hit GCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTCTGC 1553 0.23526524527878856 No Hit GAATGCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTT 1339 0.20284620954816346 No Hit CGTTTCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTT 1208 0.18300091197474344 No Hit CGCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTCTG 983 0.14891547721123577 No Hit CGTTCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTC 925 0.14012900958330934 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTAGACGGT 874 0.13240297770358095 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCT 713 0.10801295549502657 No Hit GAATGACTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCT 678 0.10271077675403648 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.5149082117114524E-4 0.0 0.0 0.08256249753827416 0.0 2 1.5149082117114524E-4 0.0 0.0 0.47765055915262095 0.0 3 1.5149082117114524E-4 0.0 0.0 0.8130512372255365 0.0 4 3.029816423422905E-4 0.0 0.0 1.5099090146128047 0.0 5 3.029816423422905E-4 0.0 0.0 3.385819853175096 0.0 6 4.5447246351343573E-4 0.0 0.0 4.717272680448292 0.0 7 4.5447246351343573E-4 0.0 0.0 5.610159580431022 0.0 8 4.5447246351343573E-4 0.0 0.0 6.843143373942973 0.0 9 4.5447246351343573E-4 0.0 0.0 7.57166273295501 0.0 10 4.5447246351343573E-4 0.0 0.0 8.888269459753433 0.0 11 4.5447246351343573E-4 0.0 0.0 9.647389964642043 0.0 12 4.5447246351343573E-4 0.0 0.0 10.700251171781503 0.0 13 4.5447246351343573E-4 0.0 0.0 11.15639003432782 0.0 14 4.5447246351343573E-4 0.0 0.0 11.442253213877772 0.0 15 4.5447246351343573E-4 0.0 0.0 11.685395981857459 0.0 16 4.5447246351343573E-4 0.0 0.0 11.988832096663263 0.0 17 4.5447246351343573E-4 0.0 0.0 12.317718669425819 0.0 18 4.5447246351343573E-4 0.0 0.0 12.71613952910593 0.0 19 4.5447246351343573E-4 0.0 0.0 13.145010043841443 0.0 20 4.5447246351343573E-4 0.0 0.0 13.440114163482834 0.0 21 4.5447246351343573E-4 0.0 0.0 13.724159453178732 0.0 22 4.5447246351343573E-4 0.0 0.0 14.073497286799393 0.0 23 4.5447246351343573E-4 0.0 0.0 14.396324226715103 0.0 24 4.5447246351343573E-4 0.0 0.0 14.660221237195238 0.0 25 4.5447246351343573E-4 0.0 0.0 14.909575128842944 0.0 26 4.5447246351343573E-4 0.0 0.0 15.161352873629387 0.0 27 4.5447246351343573E-4 0.0 0.0 15.482361923691043 0.0 28 4.5447246351343573E-4 0.0 0.0 15.783980148642794 0.0 29 4.5447246351343573E-4 0.0 0.0 16.101807891459856 0.0 30 4.5447246351343573E-4 0.0 0.0 16.56794514820347 0.0 31 6.05963284684581E-4 0.0 0.0 16.912435275546656 0.0 32 6.05963284684581E-4 0.0 0.0 17.245866572944344 0.0 33 6.05963284684581E-4 0.0 0.0 17.588538810433477 0.0 34 6.05963284684581E-4 0.0 0.0 17.917728364838375 0.0 35 6.05963284684581E-4 0.0 0.0 18.27691310183516 0.0 36 6.05963284684581E-4 0.0 0.0 18.62503900888645 0.0 37 6.05963284684581E-4 0.0 0.0 18.97407386086477 0.0 38 6.05963284684581E-4 0.0 0.0 19.395066852899383 0.0 39 7.574541058557262E-4 0.0 0.0 19.97421626223667 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTTAGCG 20 7.031102E-4 45.0 1 GATCACG 20 7.031102E-4 45.0 1 CGTTCAT 20 7.031102E-4 45.0 17 TCGTAAG 40 6.8066583E-9 45.0 1 TATAGCG 20 7.031102E-4 45.0 1 AATTGCG 30 2.1640935E-6 44.999996 1 CGTTTTT 5150 0.0 43.907764 1 CGTAAGG 115 0.0 43.04348 2 CTCACGA 65 0.0 41.538464 24 CGGTCTA 65 0.0 41.538464 31 GTACGGT 55 6.002665E-11 40.909092 32 GCGTAAG 50 1.0804797E-9 40.500004 1 ACGGGCT 195 0.0 40.384617 5 CTAGTTG 40 3.455243E-7 39.375 1 CGACGAA 35 6.2442487E-6 38.571426 19 TACGGTT 60 1.546141E-10 37.499996 33 AACGGGC 120 0.0 37.499996 4 TAACACG 30 1.13939575E-4 37.499996 1 TTGCACG 30 1.13939575E-4 37.499996 1 CGCCCCG 30 1.13939575E-4 37.499996 25 >>END_MODULE