SRR2935725.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935725.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	529431
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGC	5195	0.9812421259805338	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTC	4676	0.883212354395568	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCG	4515	0.8528023481813495	No Hit
GCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGC	2380	0.4495392222971455	No Hit
CCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGC	2064	0.3898525020257597	No Hit
CTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGCT	1330	0.25121309481311066	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1108	0.2092812850022005	No Hit
GAACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCT	996	0.1881264980705701	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCT	889	0.1679161212698161	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTA	813	0.15356108728049547	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTCGTAAGT	804	0.15186114904491804	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTC	727	0.13731723302942217	No Hit
TCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGC	629	0.11880679446424558	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAACGA	100	0.0	45.000004	13
TCGTTTG	25	3.8879443E-5	45.000004	1
GCGACTC	25	3.8879443E-5	45.000004	9
CCGTGTA	45	3.8380676E-10	45.000004	19
CGTTAGC	25	3.8879443E-5	45.000004	21
GCGTAAG	25	3.8879443E-5	45.000004	1
ACGCGAA	20	7.0298347E-4	45.0	33
TAATACG	35	1.2102646E-7	45.0	4
CGTATCG	20	7.0298347E-4	45.0	11
CTAAGCG	40	6.8030204E-9	45.0	1
AACGGGC	35	1.2102646E-7	45.0	4
GTGTACG	20	7.0298347E-4	45.0	1
GTGTAAG	70	0.0	45.0	1
GTTCCGC	20	7.0298347E-4	45.0	9
TCGTATC	20	7.0298347E-4	45.0	10
TCATCGA	20	7.0298347E-4	45.0	16
CGCGTCA	20	7.0298347E-4	45.0	39
TAAGACG	20	7.0298347E-4	45.0	19
TCGAATC	20	7.0298347E-4	45.0	26
CTTACGG	35	1.2102646E-7	45.0	2