SRR2935723.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935723.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	909566
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTC	14854	1.6330865489695086	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGC	10460	1.1499990105171038	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCG	9813	1.0788661845319636	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5618	0.6176572123408307	No Hit
GAACTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCT	4317	0.4746219625623649	No Hit
GCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGC	4052	0.4454871883953446	No Hit
CCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGC	2251	0.24748066660363294	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCT	2224	0.24451221791491765	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTC	1790	0.19679715380742027	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTT	1676	0.18426370378840018	No Hit
CGCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTG	1587	0.17447881737004242	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGCTCTGTT	1541	0.16942146034482378	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTA	1353	0.14875226206784334	No Hit
CTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGCT	1315	0.14457444539483666	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTT	1295	0.1423755945143068	No Hit
CGTTCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTC	1287	0.14149605416209488	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGAGCG	25	3.8901606E-5	45.000004	1
CCACGCG	25	3.8901606E-5	45.000004	1
CCGTTAG	25	3.8901606E-5	45.000004	1
TAGTACG	25	3.8901606E-5	45.000004	1
CCTAGCG	20	7.03251E-4	45.0	1
TCGTACC	20	7.03251E-4	45.0	45
TTGCACG	20	7.03251E-4	45.0	1
GCGTAAG	40	6.8121153E-9	45.0	1
CGGCTAG	30	2.1650012E-6	44.999996	26
CGTTTTT	3150	0.0	43.214287	1
CTGTACG	100	0.0	42.750004	1
TAGGGCG	255	0.0	40.588234	5
CGTATGG	95	0.0	40.263157	2
CTACGAA	45	1.927583E-8	40.0	11
ACGTAAG	40	3.457153E-7	39.375	1
CGTAAGG	120	0.0	39.374996	2
TGCACGG	110	0.0	38.863636	2
ACGGGCG	145	0.0	38.793102	5
GCGAACG	35	6.2468534E-6	38.571426	1
ACGTCGG	35	6.2468534E-6	38.571426	2