SRR2935720.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935720.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	672853
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTC	3367	0.5004064780865954	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGC	3118	0.46339988080606015	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCG	2889	0.4293657009777767	No Hit
CCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTGC	2142	0.3183459091361709	No Hit
GCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTGC	1857	0.27598896044158233	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1550	0.23036235254951676	No Hit
CTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTGCT	968	0.14386500468898852	No Hit
GAACTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCT	776	0.11532979714737099	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTGTCG	25	3.889076E-5	45.0	28
CGTCTTA	20	7.0312E-4	45.0	10
TATTGCG	35	1.2109194E-7	45.0	1
ACGATTG	25	3.889076E-5	45.0	1
TTACGCG	20	7.0312E-4	45.0	1
GCGTAAG	45	3.8380676E-10	45.0	1
GCCGATT	30	2.1641554E-6	44.999996	9
CGTAAGG	115	0.0	41.086956	2
ACAACGG	75	0.0	39.0	2
CTTACGG	35	6.2444287E-6	38.571426	2
ACGGGTA	90	0.0	37.5	5
CTCACGA	30	1.13941904E-4	37.499996	24
CAACGTT	30	1.13941904E-4	37.499996	8
TACGCAG	30	1.13941904E-4	37.499996	44
CGGTCTA	30	1.13941904E-4	37.499996	31
ACGTAAG	30	1.13941904E-4	37.499996	1
TAATGCG	60	1.546141E-10	37.499996	1
GCGATGC	225	0.0	37.0	9
TAGCCGT	55	2.744855E-9	36.81818	44
TTGATCG	25	0.0021064894	36.0	1