SRR2935719.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935719.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	693573
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTC	4738	0.6831292452272508	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGC	4154	0.5989275822444068	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCG	3463	0.4992985597766926	No Hit
GCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	2703	0.38972105315518335	No Hit
CCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	1749	0.25217244615923634	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1326	0.19118391286858052	No Hit
GAACTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCT	1258	0.18137960964455074	No Hit
CTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGCT	1125	0.16220354598578665	Illumina Single End Adapter 1 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCT	829	0.11952599077530411	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTT	717	0.10337772664160802	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTC	709	0.10222427920348687	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAGTCA	30	2.1642518E-6	45.000004	10
TTATCGC	20	7.031349E-4	45.0	31
CGTACGT	25	3.8892E-5	45.0	11
ACTCGAT	25	3.8892E-5	45.0	16
TATAGCG	35	1.2109922E-7	45.0	1
TTAAACG	20	7.031349E-4	45.0	1
CAATGCG	20	7.031349E-4	45.0	1
ACGTACG	25	3.8892E-5	45.0	10
CGCAATT	25	3.8892E-5	45.0	11
AAATGCG	45	3.8380676E-10	45.0	1
GCTACGA	65	0.0	41.538464	10
CACAACG	205	0.0	40.609756	12
ATACGAG	50	1.0804797E-9	40.5	2
TCGGATT	45	1.9264917E-8	40.0	17
TTGCACG	45	1.9264917E-8	40.0	1
ACAACGA	210	0.0	39.642857	13
GTATCGC	40	3.4555705E-7	39.375	5
AATCCGT	35	6.244707E-6	38.571426	11
TACGAAT	70	0.0	38.571426	12
CCGACGG	35	6.244707E-6	38.571426	2