##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935719.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 693573 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.01985371402866 33.0 31.0 34.0 30.0 34.0 2 32.05667608168138 33.0 31.0 34.0 30.0 34.0 3 32.09635034812486 33.0 31.0 34.0 30.0 34.0 4 35.747307060684314 37.0 35.0 37.0 33.0 37.0 5 34.810987451933684 37.0 35.0 37.0 33.0 37.0 6 35.28683498348408 37.0 35.0 37.0 33.0 37.0 7 35.83597833248987 37.0 35.0 37.0 35.0 37.0 8 35.800002306894875 37.0 35.0 37.0 35.0 37.0 9 37.60134982186446 39.0 37.0 39.0 35.0 39.0 10 37.311365926874316 39.0 37.0 39.0 34.0 39.0 11 37.24656669160997 39.0 37.0 39.0 34.0 39.0 12 37.17525624555743 39.0 37.0 39.0 34.0 39.0 13 37.109769267258095 39.0 37.0 39.0 33.0 39.0 14 38.22181226777859 40.0 37.0 41.0 33.0 41.0 15 38.294208396232264 40.0 37.0 41.0 34.0 41.0 16 38.32632037290956 40.0 37.0 41.0 34.0 41.0 17 38.26109292028381 40.0 37.0 41.0 34.0 41.0 18 38.23569112407778 40.0 37.0 41.0 34.0 41.0 19 38.17070156998614 40.0 37.0 41.0 34.0 41.0 20 38.130156450726886 40.0 37.0 41.0 34.0 41.0 21 38.06649912842628 40.0 37.0 41.0 34.0 41.0 22 38.100740657436205 40.0 37.0 41.0 34.0 41.0 23 38.09343068429711 40.0 37.0 41.0 34.0 41.0 24 38.05762335038994 40.0 37.0 41.0 34.0 41.0 25 37.8953275286091 40.0 36.0 41.0 33.0 41.0 26 37.91585168396117 40.0 36.0 41.0 34.0 41.0 27 37.90110630027409 40.0 36.0 41.0 34.0 41.0 28 37.72962326964862 40.0 36.0 41.0 33.0 41.0 29 37.659470596462086 40.0 36.0 41.0 33.0 41.0 30 37.557866295256595 40.0 36.0 41.0 33.0 41.0 31 37.53022969463921 40.0 36.0 41.0 33.0 41.0 32 37.48010663621565 40.0 36.0 41.0 33.0 41.0 33 37.34916584123084 40.0 35.0 41.0 33.0 41.0 34 37.259294984089635 40.0 35.0 41.0 32.0 41.0 35 37.19742406350882 40.0 35.0 41.0 32.0 41.0 36 37.13359084047389 40.0 35.0 41.0 32.0 41.0 37 37.12254513944458 40.0 35.0 41.0 32.0 41.0 38 37.017311804236904 39.0 35.0 41.0 32.0 41.0 39 36.94414142419039 39.0 35.0 41.0 31.0 41.0 40 36.852182827186176 39.0 35.0 41.0 31.0 41.0 41 36.69736422842296 39.0 35.0 41.0 31.0 41.0 42 36.71435162556789 39.0 35.0 41.0 31.0 41.0 43 36.59853396830615 39.0 35.0 41.0 31.0 41.0 44 36.49971956809161 39.0 35.0 41.0 31.0 41.0 45 36.46048072805602 39.0 35.0 41.0 31.0 41.0 46 36.319764466033135 39.0 35.0 41.0 30.0 41.0 47 36.20559479679861 38.0 35.0 41.0 30.0 41.0 48 36.15928532396734 38.0 35.0 40.0 30.0 41.0 49 36.09686795766271 38.0 35.0 40.0 30.0 41.0 50 35.966278964146525 38.0 35.0 40.0 30.0 41.0 51 34.78104828186795 37.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 15.0 10 12.0 11 16.0 12 11.0 13 23.0 14 11.0 15 30.0 16 47.0 17 74.0 18 188.0 19 379.0 20 672.0 21 1160.0 22 1713.0 23 2324.0 24 3266.0 25 4175.0 26 5252.0 27 6261.0 28 7086.0 29 8348.0 30 10283.0 31 13273.0 32 17035.0 33 23777.0 34 42432.0 35 56712.0 36 51095.0 37 76821.0 38 132256.0 39 228703.0 40 121.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.585068911275386 17.53658230640466 20.88316586718341 16.995182915136546 2 28.770727810915364 27.052235309044615 25.84111549901741 18.33592138102262 3 31.34983628255425 26.43211313012473 25.787480193144773 16.430570394176243 4 27.741420153322 24.917925005731192 27.985662648344157 19.35499219260265 5 26.117366160447425 30.4015583074889 24.040151505321 19.440924026742678 6 25.81732564560616 35.32937412500198 23.754529083456248 15.098771145935611 7 76.89889889023938 6.458728929759376 11.453156336823954 5.189215843177286 8 76.98266801043293 7.43036421544668 9.575488088492486 6.011479685627901 9 70.39979930014577 7.7061823340874 12.304833088946657 9.589185276820176 10 38.999499692173714 26.711679952939342 18.209618886548352 16.07920146833859 11 30.967612637746853 25.455864054684945 25.177306498378687 18.399216809189518 12 28.09149145079177 21.029076968105738 29.520324464764343 21.35910711633815 13 25.556358162731247 22.852965729634807 31.83918635817715 19.7514897494568 14 20.745617260187462 27.86109032502707 29.245227250772448 22.148065164013016 15 18.80638375484628 24.785134369417495 35.93969200069784 20.468789875038386 16 21.880321177439143 24.27430133525959 31.307014546414003 22.53836294088726 17 21.531547508337262 24.042602581127003 29.42300233717287 25.002847573362864 18 23.52340705304272 23.52052343444742 29.552909354891266 23.403160157618593 19 24.650901923806146 26.33623281183091 26.49987816711435 22.512987097248597 20 26.01701623333088 25.27160082644509 27.681585067469467 21.029797872754564 21 25.027214150493172 27.858639249221063 26.688034280457863 20.426112319827904 22 22.262400641316777 25.330282464859504 27.22092699686983 25.186389896953887 23 21.51655269164169 27.14234839014783 27.734643649623038 23.606455268587446 24 22.90833120666462 24.08960556423044 28.231202771734193 24.770860457370745 25 21.908869001532643 27.224819881973488 26.45979586863964 24.406515247854227 26 21.53284513670515 25.569334446410114 27.32617907559839 25.571641341286355 27 22.69609687805033 26.02898325050139 26.141444375718205 25.133475495730085 28 20.91762510939728 26.108426942801984 29.534598376811093 23.43934957098964 29 24.078215270778998 24.282519648256205 27.877526951020297 23.761738129944504 30 23.32313974159894 24.597122437003748 27.760452036051 24.319285785346313 31 23.965033240913357 24.550696177619372 27.001916164556576 24.48235441691069 32 25.92747987594673 25.155390997054383 27.388321056327165 21.528808070671722 33 23.749194389054935 23.118979545051495 27.022389856583228 26.10943620931034 34 23.247444753472237 23.573293654741462 30.27813943160994 22.901122160176364 35 22.28388359985178 23.11624010738596 29.39459869400914 25.205277598753124 36 23.150987711459354 24.908553245296456 29.211488913207408 22.728970130036778 37 22.03877601925104 24.4914378154859 31.15548038923084 22.314305776032228 38 22.40153523854014 24.897883856493838 28.63836971739096 24.062211187575063 39 22.91366590106593 22.690329640859723 30.32889111888727 24.06711333918708 40 24.987276032948227 21.261640807816914 30.111898819590728 23.63918433964413 41 20.91286713871503 23.53090446139051 30.455914518010363 25.1003138818841 42 23.482748030848953 23.59419988955741 29.206586761595393 23.71646531799825 43 23.15502477749278 22.7839030642773 29.07091250668639 24.99015965154353 44 22.24567565346402 23.235333555371966 29.22590700618392 25.293083784980098 45 21.934244845171307 22.102503990207232 28.85190167437314 27.111349490248323 46 23.898854194151156 23.76159394901474 27.739257439375525 24.600294417458578 47 21.231074450706704 23.28478761428141 31.317539754286862 24.16659818072503 48 22.119949882708813 23.031317539754287 29.26598930465863 25.58274327287827 49 22.012102547244485 21.526212813935953 32.01652890178828 24.445155737031286 50 21.23453479302107 21.726480125379734 31.26001156331057 25.778973518288627 51 20.48767757683762 22.11317337900985 28.725599179898868 28.673549864253655 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 241.0 1 734.5 2 1228.0 3 1962.5 4 2697.0 5 1966.0 6 1235.0 7 1212.5 8 1190.0 9 1220.5 10 1251.0 11 1312.0 12 1373.0 13 1454.5 14 1536.0 15 1526.5 16 1517.0 17 1479.0 18 1441.0 19 1477.0 20 1513.0 21 1721.0 22 1929.0 23 2169.5 24 2410.0 25 3432.5 26 5075.0 27 5695.0 28 6272.5 29 6850.0 30 7824.5 31 8799.0 32 10369.5 33 11940.0 34 14007.5 35 16075.0 36 16931.0 37 17787.0 38 19720.0 39 21653.0 40 23943.5 41 26234.0 42 29944.5 43 33655.0 44 39010.0 45 44365.0 46 58368.5 47 72372.0 48 70239.5 49 68107.0 50 67679.5 51 67252.0 52 59245.0 53 51238.0 54 45672.5 55 40107.0 56 38101.5 57 36096.0 58 34734.0 59 33372.0 60 31916.5 61 30461.0 62 27672.0 63 24883.0 64 21588.5 65 18294.0 66 14655.0 67 11016.0 68 9209.5 69 7403.0 70 6383.5 71 5364.0 72 4688.0 73 4012.0 74 3668.0 75 2403.0 76 1482.0 77 1160.5 78 839.0 79 659.0 80 479.0 81 350.0 82 221.0 83 172.0 84 123.0 85 81.0 86 39.0 87 24.0 88 9.0 89 7.0 90 5.0 91 4.0 92 3.0 93 2.0 94 1.0 95 1.0 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 693573.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.233260820147166 #Duplication Level Percentage of deduplicated Percentage of total 1 74.40688080376701 23.983763957614233 2 9.81566195924407 6.327815841094217 3 3.4835896201483063 3.3686235844979326 4 1.7812947135724282 2.2966774840051767 5 1.116214817346679 1.7989621669424218 6 0.8222664476534577 1.5902597322521872 7 0.6760786939888566 1.525455461480109 8 0.5707967549462221 1.471891254198016 9 0.5075030230533605 1.4722629578182913 >10 6.560541514722448 46.015612101361384 >50 0.21172399169367973 4.209870094286021 >100 0.039838129507998685 2.1547124538445668 >500 0.004028574894067283 0.8239964392598313 >1k 0.003580955461393141 2.960096471345596 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTC 4738 0.6831292452272508 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGC 4154 0.5989275822444068 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCG 3463 0.4992985597766926 No Hit GCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC 2703 0.38972105315518335 No Hit CCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC 1749 0.25217244615923634 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1326 0.19118391286858052 No Hit GAACTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCT 1258 0.18137960964455074 No Hit CTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGCT 1125 0.16220354598578665 Illumina Single End Adapter 1 (95% over 21bp) GAATGACTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCT 829 0.11952599077530411 No Hit GAATGCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTT 717 0.10337772664160802 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTC 709 0.10222427920348687 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.441809297651437E-4 0.0 0.0 0.17186366828005126 0.0 2 1.441809297651437E-4 0.0 0.0 1.0026341855868093 0.0 3 1.441809297651437E-4 0.0 0.0 1.3459289793576164 0.0 4 1.441809297651437E-4 0.0 0.0 1.9323128207124556 0.0 5 1.441809297651437E-4 0.0 0.0 3.648786789566491 0.0 6 2.883618595302874E-4 0.0 0.0 4.815066330436738 0.0 7 2.883618595302874E-4 0.0 0.0 5.805877679782806 0.0 8 2.883618595302874E-4 0.0 0.0 7.434689643339634 0.0 9 2.883618595302874E-4 0.0 0.0 8.167417128406095 0.0 10 2.883618595302874E-4 0.0 0.0 9.928298823627793 0.0 11 2.883618595302874E-4 0.0 0.0 11.127163254624964 0.0 12 2.883618595302874E-4 0.0 0.0 12.888477492635959 0.0 13 4.3254278929543105E-4 0.0 0.0 13.441988082004345 0.0 14 4.3254278929543105E-4 0.0 0.0 13.700071946283952 0.0 15 5.767237190605748E-4 0.0 0.0 14.113294490990855 0.0 16 5.767237190605748E-4 0.0 0.0 14.76744336933531 0.0 17 5.767237190605748E-4 0.0 0.0 15.498008140455294 0.0 18 5.767237190605748E-4 0.0 0.0 16.413701225393723 0.0 19 5.767237190605748E-4 0.0 0.0 16.99244347747101 0.0 20 7.209046488257184E-4 0.0 0.0 17.531968516652178 0.0 21 7.209046488257184E-4 0.0 0.0 18.104366807819797 0.0 22 7.209046488257184E-4 0.0 0.0 18.72088446349555 0.0 23 7.209046488257184E-4 1.441809297651437E-4 0.0 19.309142656937336 0.0 24 7.209046488257184E-4 1.441809297651437E-4 0.0 19.771530898694152 0.0 25 7.209046488257184E-4 1.441809297651437E-4 0.0 20.180283834578336 0.0 26 7.209046488257184E-4 1.441809297651437E-4 0.0 20.5750512202753 0.0 27 7.209046488257184E-4 1.441809297651437E-4 0.0 20.991445745437034 0.0 28 7.209046488257184E-4 1.441809297651437E-4 0.0 21.39270127297343 0.0 29 7.209046488257184E-4 1.441809297651437E-4 0.0 21.830146213880873 0.0 30 8.650855785908621E-4 1.441809297651437E-4 0.0 22.38106154651349 0.0 31 0.0010092665083560057 1.441809297651437E-4 0.0 22.83177113295933 0.0 32 0.0010092665083560057 1.441809297651437E-4 0.0 23.284931795211175 0.0 33 0.0010092665083560057 1.441809297651437E-4 0.0 23.74140861884762 0.0 34 0.0010092665083560057 1.441809297651437E-4 0.0 24.17395140814305 0.0 35 0.0010092665083560057 1.441809297651437E-4 0.0 24.622786642501943 0.0 36 0.0011534474381211495 1.441809297651437E-4 0.0 25.04768784251982 0.0 37 0.0011534474381211495 1.441809297651437E-4 0.0 25.479509727166427 0.0 38 0.0011534474381211495 1.441809297651437E-4 0.0 25.920559191318002 0.0 39 0.0011534474381211495 1.441809297651437E-4 0.0 26.374729120078204 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAGTCA 30 2.1642518E-6 45.000004 10 TTATCGC 20 7.031349E-4 45.0 31 CGTACGT 25 3.8892E-5 45.0 11 ACTCGAT 25 3.8892E-5 45.0 16 TATAGCG 35 1.2109922E-7 45.0 1 TTAAACG 20 7.031349E-4 45.0 1 CAATGCG 20 7.031349E-4 45.0 1 ACGTACG 25 3.8892E-5 45.0 10 CGCAATT 25 3.8892E-5 45.0 11 AAATGCG 45 3.8380676E-10 45.0 1 GCTACGA 65 0.0 41.538464 10 CACAACG 205 0.0 40.609756 12 ATACGAG 50 1.0804797E-9 40.5 2 TCGGATT 45 1.9264917E-8 40.0 17 TTGCACG 45 1.9264917E-8 40.0 1 ACAACGA 210 0.0 39.642857 13 GTATCGC 40 3.4555705E-7 39.375 5 AATCCGT 35 6.244707E-6 38.571426 11 TACGAAT 70 0.0 38.571426 12 CCGACGG 35 6.244707E-6 38.571426 2 >>END_MODULE