SRR2935718.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935718.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	612800
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTC	14084	2.298302872062663	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGC	12437	2.0295365535248044	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCG	10787	1.7602806788511751	No Hit
GCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC	6203	1.012238903394256	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTT	3998	0.6524151436031331	No Hit
CCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC	3749	0.6117819843342037	No Hit
GAACTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCT	3209	0.5236618798955613	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCT	2720	0.44386422976501305	No Hit
CTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGCT	2287	0.37320496083550914	Illumina Single End Adapter 2 (95% over 21bp)
GAATGATCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTC	2226	0.36325065274151436	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTA	1965	0.3206592689295039	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTTTCTGGT	1836	0.2996083550913838	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1285	0.20969321148825065	No Hit
TCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC	1249	0.20381853785900783	No Hit
ACTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC	801	0.13071148825065274	No Hit
GCCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTG	708	0.11553524804177545	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATG	674	0.10998694516971279	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGAG	25	3.888666E-5	45.000004	1
ACCGAAC	25	3.888666E-5	45.000004	24
ATTCGGG	25	3.888666E-5	45.000004	3
CACGAAG	25	3.888666E-5	45.000004	1
TTATCGG	25	3.888666E-5	45.000004	2
TCAGGCG	35	1.210683E-7	45.000004	1
CTAACGG	25	3.888666E-5	45.000004	2
TGCGACG	25	3.888666E-5	45.000004	1
CGGTCGA	25	3.888666E-5	45.000004	41
CTCTATA	25	3.888666E-5	45.000004	32
ATGTTAG	35	1.210683E-7	45.000004	1
CGAAGTA	25	3.888666E-5	45.000004	23
AAGTCCG	50	2.1827873E-11	45.000004	11
TCGTTTA	20	7.0307066E-4	45.0	38
TTGGCCG	20	7.0307066E-4	45.0	1
GTCGACG	20	7.0307066E-4	45.0	1
CTGAGCG	45	3.8380676E-10	45.0	1
CGCATCG	20	7.0307066E-4	45.0	21
CCGCTAT	20	7.0307066E-4	45.0	29
GCCGCAT	20	7.0307066E-4	45.0	19