Basic Statistics
Measure | Value |
---|---|
Filename | SRR2935717.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 234145 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 34 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 19452 | 8.307672596040915 | No Hit |
CCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC | 634 | 0.27077238463345366 | No Hit |
GCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC | 574 | 0.24514723782271666 | No Hit |
CTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGCT | 383 | 0.16357385380853745 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA | 347 | 0.14819876572209528 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA | 311 | 0.13282367763565311 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA | 299 | 0.12769864827350574 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA | 265 | 0.11317773174742148 | No Hit |
CGCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTG | 236 | 0.10079224412223196 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAA | 235 | 0.10036515834205299 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGACAAT | 30 | 2.1580727E-6 | 45.000004 | 20 |
TAGCATA | 30 | 2.1580727E-6 | 45.000004 | 30 |
GTAGCAT | 30 | 2.1580727E-6 | 45.000004 | 29 |
TCGACAA | 30 | 2.1580727E-6 | 45.000004 | 19 |
CTCAGAT | 60 | 0.0 | 45.000004 | 16 |
AACAAGC | 25 | 3.881261E-5 | 45.0 | 13 |
CGGAAGG | 20 | 7.0217694E-4 | 45.0 | 2 |
GGTACGG | 20 | 7.0217694E-4 | 45.0 | 2 |
AGTTTAG | 25 | 3.881261E-5 | 45.0 | 1 |
ACGTTAG | 25 | 3.881261E-5 | 45.0 | 1 |
GAATATC | 20 | 7.0217694E-4 | 45.0 | 22 |
TACGGGA | 25 | 3.881261E-5 | 45.0 | 4 |
TGTGCGG | 25 | 3.881261E-5 | 45.0 | 2 |
CCGCTAT | 20 | 7.0217694E-4 | 45.0 | 25 |
TTGAGCG | 20 | 7.0217694E-4 | 45.0 | 1 |
CGCTATC | 20 | 7.0217694E-4 | 45.0 | 26 |
CTACGGG | 20 | 7.0217694E-4 | 45.0 | 3 |
ATTGGGA | 50 | 2.1827873E-11 | 45.0 | 4 |
ATAGTAG | 20 | 7.0217694E-4 | 45.0 | 1 |
AATAGGG | 35 | 1.2063902E-7 | 45.0 | 3 |