FastQCFastQC Report
Sat 14 Jan 2017
SRR2935717.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2935717.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences234145
Sequences flagged as poor quality0
Sequence length51
%GC34

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT194528.307672596040915No Hit
CCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC6340.27077238463345366No Hit
GCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC5740.24514723782271666No Hit
CTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGCT3830.16357385380853745No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA3470.14819876572209528No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA3110.13282367763565311No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA2990.12769864827350574No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA2650.11317773174742148No Hit
CGCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTG2360.10079224412223196No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAA2350.10036515834205299No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGACAAT302.1580727E-645.00000420
TAGCATA302.1580727E-645.00000430
GTAGCAT302.1580727E-645.00000429
TCGACAA302.1580727E-645.00000419
CTCAGAT600.045.00000416
AACAAGC253.881261E-545.013
CGGAAGG207.0217694E-445.02
GGTACGG207.0217694E-445.02
AGTTTAG253.881261E-545.01
ACGTTAG253.881261E-545.01
GAATATC207.0217694E-445.022
TACGGGA253.881261E-545.04
TGTGCGG253.881261E-545.02
CCGCTAT207.0217694E-445.025
TTGAGCG207.0217694E-445.01
CGCTATC207.0217694E-445.026
CTACGGG207.0217694E-445.03
ATTGGGA502.1827873E-1145.04
ATAGTAG207.0217694E-445.01
AATAGGG351.2063902E-745.03