SRR2935717.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935717.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	234145
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19452	8.307672596040915	No Hit
CCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC	634	0.27077238463345366	No Hit
GCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC	574	0.24514723782271666	No Hit
CTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGCT	383	0.16357385380853745	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	347	0.14819876572209528	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	311	0.13282367763565311	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	299	0.12769864827350574	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA	265	0.11317773174742148	No Hit
CGCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTG	236	0.10079224412223196	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAA	235	0.10036515834205299	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACAAT	30	2.1580727E-6	45.000004	20
TAGCATA	30	2.1580727E-6	45.000004	30
GTAGCAT	30	2.1580727E-6	45.000004	29
TCGACAA	30	2.1580727E-6	45.000004	19
CTCAGAT	60	0.0	45.000004	16
AACAAGC	25	3.881261E-5	45.0	13
CGGAAGG	20	7.0217694E-4	45.0	2
GGTACGG	20	7.0217694E-4	45.0	2
AGTTTAG	25	3.881261E-5	45.0	1
ACGTTAG	25	3.881261E-5	45.0	1
GAATATC	20	7.0217694E-4	45.0	22
TACGGGA	25	3.881261E-5	45.0	4
TGTGCGG	25	3.881261E-5	45.0	2
CCGCTAT	20	7.0217694E-4	45.0	25
TTGAGCG	20	7.0217694E-4	45.0	1
CGCTATC	20	7.0217694E-4	45.0	26
CTACGGG	20	7.0217694E-4	45.0	3
ATTGGGA	50	2.1827873E-11	45.0	4
ATAGTAG	20	7.0217694E-4	45.0	1
AATAGGG	35	1.2063902E-7	45.0	3