##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935717.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 234145 Sequences flagged as poor quality 0 Sequence length 51 %GC 34 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.42760255397297 34.0 31.0 34.0 31.0 34.0 2 32.637690320100795 34.0 31.0 34.0 31.0 34.0 3 32.4715923893314 34.0 31.0 34.0 31.0 34.0 4 36.09515471182387 37.0 35.0 37.0 35.0 37.0 5 36.12534967648252 37.0 35.0 37.0 35.0 37.0 6 36.147058446689016 37.0 37.0 37.0 35.0 37.0 7 36.27980524888424 37.0 37.0 37.0 35.0 37.0 8 36.03682333596703 37.0 37.0 37.0 35.0 37.0 9 37.85039185120331 39.0 38.0 39.0 35.0 39.0 10 37.73100856306989 39.0 38.0 39.0 35.0 39.0 11 37.74019090734374 39.0 38.0 39.0 35.0 39.0 12 37.59585726793227 39.0 37.0 39.0 35.0 39.0 13 37.54277477631382 39.0 37.0 39.0 35.0 39.0 14 38.9620534284311 41.0 38.0 41.0 35.0 41.0 15 39.0804330649811 41.0 39.0 41.0 35.0 41.0 16 39.13499754425676 41.0 39.0 41.0 35.0 41.0 17 39.08832133934101 41.0 39.0 41.0 35.0 41.0 18 38.41453799995729 39.0 38.0 40.0 35.0 41.0 19 37.69567575647569 37.0 37.0 40.0 35.0 41.0 20 36.87018300625681 35.0 35.0 40.0 34.0 41.0 21 36.823903991116616 35.0 35.0 40.0 34.0 41.0 22 36.81469602169596 35.0 35.0 40.0 34.0 41.0 23 36.831442055136776 35.0 35.0 40.0 34.0 41.0 24 36.66096222426275 35.0 35.0 40.0 34.0 41.0 25 36.5611010271413 35.0 35.0 40.0 34.0 41.0 26 36.404087210916316 35.0 35.0 40.0 33.0 41.0 27 36.31828994853616 35.0 35.0 40.0 33.0 41.0 28 36.16574344957185 35.0 35.0 40.0 33.0 41.0 29 35.90677144504474 35.0 35.0 40.0 33.0 41.0 30 35.409891306668946 35.0 35.0 40.0 31.0 41.0 31 34.74640927630315 35.0 35.0 40.0 24.0 41.0 32 33.71132845031924 35.0 34.0 40.0 18.0 41.0 33 32.534544833329775 35.0 33.0 40.0 12.0 41.0 34 31.546554485468405 35.0 30.0 40.0 8.0 41.0 35 30.9887847274125 35.0 24.0 40.0 7.0 41.0 36 30.626240150334194 35.0 23.0 40.0 7.0 41.0 37 30.43713937944436 35.0 23.0 40.0 7.0 41.0 38 30.276439812936427 35.0 22.0 40.0 7.0 41.0 39 30.171517649319867 35.0 22.0 40.0 7.0 41.0 40 30.050161224882018 35.0 21.0 40.0 7.0 41.0 41 29.86689444574943 35.0 21.0 40.0 7.0 41.0 42 29.733566806893165 35.0 20.0 40.0 7.0 41.0 43 29.570253475410535 35.0 18.0 40.0 7.0 41.0 44 29.428055264899957 35.0 18.0 40.0 7.0 41.0 45 29.394170279100557 35.0 20.0 40.0 7.0 41.0 46 29.331448461423477 35.0 20.0 40.0 7.0 41.0 47 29.360631232783103 35.0 20.0 40.0 7.0 41.0 48 29.337483183497405 35.0 20.0 40.0 7.0 41.0 49 29.316718272865106 35.0 20.0 40.0 7.0 41.0 50 29.184466890174892 35.0 20.0 39.0 7.0 41.0 51 28.59391402763245 35.0 20.0 39.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 4.0 9 6.0 10 3.0 11 4.0 12 1.0 13 3.0 14 5.0 15 7.0 16 32.0 17 56.0 18 111.0 19 236.0 20 388.0 21 602.0 22 991.0 23 1636.0 24 3335.0 25 6869.0 26 12196.0 27 15191.0 28 13626.0 29 10518.0 30 8123.0 31 6838.0 32 6351.0 33 6924.0 34 11357.0 35 18426.0 36 17468.0 37 14935.0 38 26642.0 39 51207.0 40 53.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.87157530590019 12.679749727732814 14.126289265198915 47.32238570116808 2 59.741186017211554 15.12823250549873 14.166862414315915 10.963719062973798 3 19.633560400606463 15.562151658160541 54.248862884110274 10.555425057122724 4 19.058275854705418 15.956778919045892 53.398535095773994 11.586410130474706 5 16.162634265092144 18.168229088812488 52.77797945717397 12.891157188921396 6 15.630912468769353 21.587477844925154 53.13801276986483 9.643596916440666 7 48.63268487475709 4.022293877725342 43.85658459501591 3.488436652501655 8 48.0035875205535 3.924491234064362 44.221315851288736 3.850605394093404 9 44.2828162036345 5.3249055072711355 45.693907621345744 4.698370667748617 10 25.336436823335966 15.512609707659783 49.66665954857033 9.484293920433919 11 20.839223558051636 15.211941318413805 52.01306882487348 11.935766298661086 12 19.51184095325546 13.588161182173438 55.03341946229901 11.866578402272095 13 15.523713937944436 15.943539259860342 55.74793397253839 12.784812829656836 14 12.183476051164877 18.590616925409467 55.187597428943604 14.038309594482051 15 11.910995323410708 16.01400841358987 59.675414807064 12.399581455935426 16 13.172179632279143 15.237566465224539 58.18104166221786 13.409212240278459 17 12.611416002904182 15.117982446774434 55.6544021866792 16.61619936364219 18 13.90078797326443 16.535053065408185 55.61724572380362 13.946913237523756 19 15.881611821734396 16.87031540284866 53.820068760810614 13.428004014606335 20 17.410151828994856 15.284972986824405 54.64306305921545 12.6618121249653 21 14.672104892267612 16.85921117256401 55.015908945311665 13.452774989856714 22 13.55527557709966 16.067821221892416 54.20743556343292 16.169467637575007 23 14.663136090883855 16.075935851715816 54.87838732409405 14.382540733306284 24 14.898887441542632 15.000106771445045 55.55531828567768 14.545687501334642 25 13.582181981250935 16.702043605458154 54.46411411732046 15.251660295970446 26 12.698541502060689 18.32155288389673 54.57729184906789 14.402613764974696 27 14.954408592965898 17.251275918768286 54.45770783061777 13.33660765764804 28 12.370966708663435 17.51008990155673 55.944820517200874 14.174122872578957 29 13.606525870721134 16.80710670738218 55.40370283371415 14.182664588182536 30 15.135920049541951 16.443229622669715 53.56851523628521 14.852335091503127 31 15.641162527493647 18.119541309872087 51.24346024899101 14.995835913643255 32 16.15665506416964 18.787076384291783 49.72559738623502 15.33067116530355 33 16.267697367016165 20.161438424907644 47.32452113006897 16.246343078007218 34 15.537807768690342 21.571675671058532 46.05265967669606 16.837856883555062 35 16.54658438147302 22.105532896282217 42.54585833564671 18.80202438659805 36 17.402464284951634 24.662495462213585 41.651113626171814 16.283926626662964 37 18.20495846590788 24.082512972730573 42.376732366695855 15.335796194665699 38 16.236093019282922 24.0799504580495 41.27527813961434 18.408678383053235 39 17.860300241303463 23.15360140084136 41.262465566208974 17.723632791646203 40 17.78171645775054 23.052809156719125 41.6472698541502 17.51820453138013 41 16.03792521727989 24.711183241153986 39.73520681628905 19.515684725277072 42 16.914305238207096 24.057314911700015 40.10933395972581 18.91904589036708 43 17.694590958594034 23.63663541822375 40.037156462875565 18.63161716030665 44 16.89209677763779 23.946272608853487 39.79884259753572 19.36278801597301 45 17.226077857737724 23.199726665100687 39.35723590083068 20.216959576330908 46 17.113754297550663 23.612291528753552 39.97437485318927 19.299579320506524 47 16.381729270323945 22.65220269491127 42.560379252172794 18.405688782591984 48 15.933289201136047 21.099318798180615 43.13822631275492 19.82916568792842 49 15.90766405432531 20.91396356958295 43.9317516923274 19.246620683764334 50 14.892908240620129 20.96393260586389 43.78696961284674 20.35618954066924 51 15.056909180208844 20.793525379572486 42.073074376988615 22.07649106323005 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 97.0 1 181.0 2 265.0 3 15797.0 4 31329.0 5 20419.0 6 9509.0 7 9050.0 8 8591.0 9 8292.0 10 7993.0 11 7535.0 12 7077.0 13 6544.5 14 6012.0 15 5423.5 16 4835.0 17 4472.5 18 4110.0 19 3774.0 20 3438.0 21 3097.5 22 2757.0 23 2610.0 24 2463.0 25 2336.0 26 2260.0 27 2311.0 28 2324.0 29 2337.0 30 2387.5 31 2438.0 32 2657.5 33 2877.0 34 3311.0 35 3745.0 36 3729.5 37 3714.0 38 4155.0 39 4596.0 40 5122.5 41 5649.0 42 6813.5 43 7978.0 44 9063.0 45 10148.0 46 11467.0 47 12786.0 48 13731.0 49 14676.0 50 14900.5 51 15125.0 52 12975.0 53 10825.0 54 9527.5 55 8230.0 56 7606.0 57 6982.0 58 6823.0 59 6664.0 60 6279.0 61 5894.0 62 5505.5 63 5117.0 64 4547.0 65 3977.0 66 3242.5 67 2508.0 68 2191.5 69 1875.0 70 1486.0 71 1097.0 72 969.0 73 841.0 74 693.5 75 393.5 76 241.0 77 207.5 78 174.0 79 130.0 80 86.0 81 47.0 82 8.0 83 9.5 84 11.0 85 6.5 86 2.0 87 1.0 88 0.0 89 0.5 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 234145.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.76538170591896 #Duplication Level Percentage of deduplicated Percentage of total 1 80.034911848603 35.02758466853687 2 7.878078214524185 6.895742003354711 3 2.740801354446596 3.598566523723649 4 1.4765762155391635 2.584916867638111 5 0.9937017732004805 2.1744868702983773 6 0.8417467029400735 2.210361945232266 7 0.7077869792200956 2.168359711843278 8 0.636808339568161 2.229612804377042 9 0.6018188702510929 2.37049493169276 >10 3.9748037011463935 27.322819857425234 >50 0.08797352256057488 2.5183774135587282 >100 0.02199338064014372 1.859469077071681 >500 0.0019993982400130657 0.5285267400241389 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 9.996991200065329E-4 8.510680585223138 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 19452 8.307672596040915 No Hit CCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC 634 0.27077238463345366 No Hit GCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC 574 0.24514723782271666 No Hit CTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGCT 383 0.16357385380853745 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 347 0.14819876572209528 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA 311 0.13282367763565311 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA 299 0.12769864827350574 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA 265 0.11317773174742148 No Hit CGCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTG 236 0.10079224412223196 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAA 235 0.10036515834205299 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.17168848363193748 0.0 2 0.0 0.0 0.0 0.853744474577719 0.0 3 0.0 0.0 0.0 1.2167673877298255 0.0 4 0.0 0.0 0.0 1.614384249076427 0.0 5 0.0 0.0 0.0 2.668004868777894 0.0 6 0.0 0.0 0.0 3.218945525208738 0.0 7 0.0 0.0 0.0 3.763052809156719 0.0 8 0.0 0.0 0.0 4.626193170898375 0.0 9 0.0 0.0 0.0 4.939247047769545 0.0 10 0.0 0.0 0.0 5.64393858506481 0.0 11 4.2708578017894896E-4 0.0 0.0 6.674923658416793 0.0 12 4.2708578017894896E-4 0.0 0.0 7.520126417390933 0.0 13 4.2708578017894896E-4 0.0 0.0 7.876315958060176 0.0 14 4.2708578017894896E-4 0.0 0.0 8.02109803754084 0.0 15 4.2708578017894896E-4 0.0 0.0 8.295714194195904 0.0 16 4.2708578017894896E-4 0.0 0.0 8.82145678959619 0.0 17 4.2708578017894896E-4 0.0 0.0 9.407418480001708 0.0 18 4.2708578017894896E-4 0.0 0.0 10.143287279250037 0.0 19 4.2708578017894896E-4 0.0 0.0 10.510581050203934 0.0 20 4.2708578017894896E-4 0.0 0.0 10.889406137222661 0.0 21 4.2708578017894896E-4 0.0 0.0 11.336137863289842 0.0 22 4.2708578017894896E-4 0.0 0.0 11.823869824254201 0.0 23 4.2708578017894896E-4 0.0 0.0 12.28341412372675 0.0 24 4.2708578017894896E-4 0.0 0.0 12.6536974951419 0.0 25 4.2708578017894896E-4 0.0 0.0 12.964615943112173 0.0 26 4.2708578017894896E-4 0.0 0.0 13.269555190159943 0.0 27 4.2708578017894896E-4 0.0 0.0 13.548015118836618 0.0 28 4.2708578017894896E-4 0.0 0.0 13.870037797091546 0.0 29 4.2708578017894896E-4 0.0 0.0 14.195050075807726 0.0 30 4.2708578017894896E-4 0.0 0.0 14.540989557752674 0.0 31 4.2708578017894896E-4 0.0 0.0 14.86429349334814 0.0 32 4.2708578017894896E-4 0.0 0.0 15.214076747314698 0.0 33 8.541715603578979E-4 0.0 0.0 15.537380682910163 0.0 34 8.541715603578979E-4 0.0 0.0 15.838049072156142 0.0 35 8.541715603578979E-4 0.0 0.0 16.14896752012642 0.0 36 8.541715603578979E-4 0.0 0.0 16.453479681394008 0.0 37 8.541715603578979E-4 0.0 0.0 16.779773217450725 0.0 38 8.541715603578979E-4 0.0 0.0 17.096670866343505 0.0 39 8.541715603578979E-4 0.0 0.0 17.397339255589486 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGACAAT 30 2.1580727E-6 45.000004 20 TAGCATA 30 2.1580727E-6 45.000004 30 GTAGCAT 30 2.1580727E-6 45.000004 29 TCGACAA 30 2.1580727E-6 45.000004 19 CTCAGAT 60 0.0 45.000004 16 AACAAGC 25 3.881261E-5 45.0 13 CGGAAGG 20 7.0217694E-4 45.0 2 GGTACGG 20 7.0217694E-4 45.0 2 AGTTTAG 25 3.881261E-5 45.0 1 ACGTTAG 25 3.881261E-5 45.0 1 GAATATC 20 7.0217694E-4 45.0 22 TACGGGA 25 3.881261E-5 45.0 4 TGTGCGG 25 3.881261E-5 45.0 2 CCGCTAT 20 7.0217694E-4 45.0 25 TTGAGCG 20 7.0217694E-4 45.0 1 CGCTATC 20 7.0217694E-4 45.0 26 CTACGGG 20 7.0217694E-4 45.0 3 ATTGGGA 50 2.1827873E-11 45.0 4 ATAGTAG 20 7.0217694E-4 45.0 1 AATAGGG 35 1.2063902E-7 45.0 3 >>END_MODULE