SRR2935711.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935711.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	213061
Sequences flagged as poor quality	0
Sequence length	51
%GC	35

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14962	7.0224020350979295	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGC	2997	1.4066394131258184	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCG	2861	1.3428079282459013	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTC	2541	1.192616199116685	No Hit
GCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGC	1157	0.5430369706328234	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGTAGGGTT	736	0.34544097699719795	No Hit
CCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGC	713	0.3346459464660355	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCT	611	0.28677233280609776	No Hit
CTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGCT	477	0.22387954623323839	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTA	449	0.2107377699344319	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTC	405	0.19008640717916467	No Hit
GAACTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCT	381	0.17882202749447343	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	292	0.13704995283041005	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	263	0.12343882737807482	No Hit
GAATGATACGGCGACCACCGATGAATGATACGGCGAGCACCGATCGAATGC	240	0.11264379684691238	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	235	0.11029705107926838	No Hit
CGCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTG	233	0.10935835277221077	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGCGAT	45	3.8198777E-10	45.000004	31
CGGGCTC	45	3.8198777E-10	45.000004	6
GTACTGG	30	2.1571523E-6	45.000004	2
ACCCGTC	30	2.1571523E-6	45.000004	39
TGATCCG	35	1.205699E-7	45.0	4
TCGTTCA	25	3.8800776E-5	45.0	16
AGATACA	20	7.0203404E-4	45.0	21
TCATTAC	20	7.0203404E-4	45.0	29
CGCGACC	20	7.0203404E-4	45.0	10
CCGTCTA	20	7.0203404E-4	45.0	41
ATCCGGC	35	1.205699E-7	45.0	6
AACGGGA	20	7.0203404E-4	45.0	4
CCCGTCT	25	3.8800776E-5	45.0	40
CCCGTAG	20	7.0203404E-4	45.0	41
TAATTGC	20	7.0203404E-4	45.0	30
TGCGAGA	20	7.0203404E-4	45.0	12
CGAGCAC	55	1.8189894E-12	45.0	34
CGTAAGC	25	3.8800776E-5	45.0	43
TAGATAC	25	3.8800776E-5	45.0	20
CCGGTCC	20	7.0203404E-4	45.0	36