SRR2935710.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935710.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	335425
Sequences flagged as poor quality	0
Sequence length	51
%GC	35

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	26023	7.75821718715063	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGC	1285	0.3830960721472758	No Hit
GAATCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTC	1041	0.3103525378251472	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCG	1032	0.30766937467392114	No Hit
GCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTCTGC	835	0.248937914585973	TruSeq Adapter, Index 13 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTCTGC	760	0.2265782216590892	TruSeq Adapter, Index 13 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	539	0.16069165983453826	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	504	0.15025713646865915	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	475	0.14161138853693078	No Hit
CTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTCTGCT	461	0.1374375791905791	TruSeq Adapter, Index 16 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA	403	0.1201460833271223	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGACC	35	1.208482E-7	45.000004	27
ACCGGTA	20	7.026135E-4	45.0	41
TTAGCGG	20	7.026135E-4	45.0	2
TGGCGTA	20	7.026135E-4	45.0	28
CGCGCGC	20	7.026135E-4	45.0	40
CGATTGT	25	3.8848797E-5	45.0	10
GTTGTAA	20	7.026135E-4	45.0	32
TCAGCCA	25	3.8848797E-5	45.0	41
AGACCTA	25	3.8848797E-5	45.0	32
AAATTCG	20	7.026135E-4	45.0	30
GCGATAT	20	7.026135E-4	45.0	9
CGTACCA	20	7.026135E-4	45.0	31
CGTACAT	20	7.026135E-4	45.0	35
TCGTACA	20	7.026135E-4	45.0	34
CCGGTAT	20	7.026135E-4	45.0	42
CGGTATT	20	7.026135E-4	45.0	43
TGGGACG	25	3.8848797E-5	45.0	6
CGCCCCG	20	7.026135E-4	45.0	25
ATATTAC	20	7.026135E-4	45.0	45
CTTACGG	25	3.8848797E-5	45.0	2