##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935710.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 335425 Sequences flagged as poor quality 0 Sequence length 51 %GC 35 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.35978832824029 33.0 31.0 34.0 30.0 34.0 2 32.56340761720206 34.0 31.0 34.0 31.0 34.0 3 32.4048923008124 34.0 31.0 34.0 30.0 34.0 4 36.03877767012 37.0 35.0 37.0 35.0 37.0 5 36.07383170604457 37.0 35.0 37.0 35.0 37.0 6 36.07524185734516 37.0 36.0 37.0 35.0 37.0 7 36.230549303122906 37.0 37.0 37.0 35.0 37.0 8 35.96727435343221 37.0 37.0 37.0 35.0 37.0 9 37.80139524483864 39.0 38.0 39.0 35.0 39.0 10 37.66171871506298 39.0 38.0 39.0 35.0 39.0 11 37.62740702094358 39.0 37.0 39.0 35.0 39.0 12 37.574673921144814 39.0 37.0 39.0 35.0 39.0 13 37.551598718044275 39.0 37.0 39.0 35.0 39.0 14 38.951482447641055 41.0 38.0 41.0 35.0 41.0 15 39.03469628083774 41.0 39.0 41.0 35.0 41.0 16 39.10597600059626 41.0 39.0 41.0 35.0 41.0 17 39.02400834761869 41.0 39.0 41.0 35.0 41.0 18 38.38061861817098 39.0 38.0 40.0 35.0 41.0 19 37.69561600954014 37.0 37.0 40.0 35.0 41.0 20 36.845554147723035 36.0 35.0 40.0 34.0 41.0 21 36.82244018782142 36.0 35.0 40.0 34.0 41.0 22 36.81644779011702 35.0 35.0 40.0 34.0 41.0 23 36.810252664530076 35.0 35.0 40.0 34.0 41.0 24 36.64594171573377 35.0 35.0 40.0 34.0 41.0 25 36.57498695684579 35.0 35.0 40.0 33.0 41.0 26 36.40214951181337 35.0 35.0 40.0 33.0 41.0 27 36.31105314153685 35.0 35.0 40.0 33.0 41.0 28 36.1892047402549 35.0 35.0 40.0 33.0 41.0 29 35.954228217932474 35.0 35.0 40.0 33.0 41.0 30 35.47911753745249 35.0 35.0 40.0 31.0 41.0 31 34.86656033390475 35.0 35.0 40.0 25.0 41.0 32 33.850270552284414 35.0 34.0 40.0 18.0 41.0 33 32.72028322277708 35.0 33.0 40.0 12.0 41.0 34 31.750656629648955 35.0 31.0 40.0 8.0 41.0 35 31.187171498844748 35.0 27.0 40.0 7.0 41.0 36 30.849310576134755 35.0 24.0 40.0 7.0 41.0 37 30.67901617351122 35.0 23.0 40.0 7.0 41.0 38 30.498248490720727 35.0 23.0 40.0 7.0 41.0 39 30.349479019154803 35.0 23.0 40.0 7.0 41.0 40 30.195185212789745 35.0 22.0 40.0 7.0 41.0 41 30.018814936274875 35.0 21.0 40.0 7.0 41.0 42 29.870594022508758 35.0 21.0 40.0 7.0 41.0 43 29.71098159051949 35.0 20.0 40.0 7.0 41.0 44 29.59407915331296 35.0 19.0 40.0 7.0 41.0 45 29.511717969739884 35.0 20.0 40.0 7.0 41.0 46 29.459098159051948 35.0 20.0 40.0 7.0 41.0 47 29.476028918536187 35.0 20.0 40.0 7.0 41.0 48 29.462949988820153 35.0 20.0 40.0 7.0 41.0 49 29.43796079600507 35.0 20.0 40.0 7.0 41.0 50 29.320986807781175 35.0 20.0 39.0 7.0 41.0 51 28.713617052992472 35.0 20.0 39.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 4.0 8 2.0 9 5.0 10 3.0 11 4.0 12 5.0 13 8.0 14 7.0 15 12.0 16 37.0 17 84.0 18 158.0 19 308.0 20 592.0 21 929.0 22 1605.0 23 2649.0 24 4868.0 25 9847.0 26 16742.0 27 20626.0 28 19189.0 29 15092.0 30 11405.0 31 9765.0 32 9338.0 33 10257.0 34 15856.0 35 24700.0 36 26019.0 37 22589.0 38 39857.0 39 72800.0 40 63.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.849519266602073 12.666020719982113 14.224044123127374 46.26041589028844 2 58.6682566892748 15.712603413579787 14.682268763508983 10.936871133636432 3 18.887381679958263 17.160020869046733 53.21517477826638 10.737422672728627 4 17.94976522322427 14.972944771558472 54.675411791011406 12.401878214205858 5 17.24796899455914 17.329656406052024 52.474919877767014 12.947454721621824 6 15.848848475814265 21.813222031750765 52.455243347991356 9.882686144443616 7 48.6159350078259 3.8333457553849595 44.01937840053664 3.5313408362525154 8 48.379518521278975 4.679138406499217 42.98964000894387 3.951703063277931 9 45.005888052470745 4.6257732727137215 44.14190951777596 6.2264291570395764 10 26.27263918908847 14.611015875381977 48.70030558247 10.416039353059551 11 18.79943355444585 15.373332339569204 52.11597227398077 13.711261832004173 12 16.931057613475442 12.992472236714617 55.97913095326824 14.0973391965417 13 15.439815159871802 14.438100916747409 56.895878363270484 13.226205560110307 14 11.848252217336215 17.90713274204368 55.59275545949169 14.651859581128418 15 11.566221957218454 15.126779458895431 59.169411940076024 14.13758664381009 16 13.396139226354626 15.257956324066482 56.44898263397182 14.896921815607064 17 13.348438548110606 15.232615338749348 54.99888201535366 16.42006409778639 18 14.013863009614669 15.589774167101439 55.40582842662294 14.990534396660953 19 14.27740925691287 16.740553029738393 53.56577476335992 15.416262949988822 20 16.110009689200268 15.920995751658342 54.40500857121562 13.563985987925767 21 14.785123350972645 16.894685846314378 55.39658642021317 12.923604382499814 22 14.38741894611314 14.450622344786465 54.783334575538504 16.3786241335619 23 14.495341730640233 16.060520235522098 54.63426995602594 14.80986807781173 24 14.42647387642543 15.216814489081015 54.83043899530446 15.52627263918909 25 13.460535141984051 17.353506745174034 53.39733174331073 15.788626369531192 26 13.287620183349484 17.395542967876573 53.854960125214276 15.461876723559664 27 14.125959603488111 16.525005589923232 54.19005738987851 15.158977416710142 28 11.841097115599613 17.073265260490423 55.32026533502273 15.765372288887233 29 13.261682939554298 16.22121189535664 54.22225534769323 16.29484981739584 30 14.092867257956323 16.948050980099875 52.86606543936797 16.09301632257584 31 14.907952597450997 17.59916523813073 50.76335991652381 16.72952224789446 32 15.305955131549526 19.13244391443691 48.708653201162704 16.85294775285086 33 16.30051427293732 18.757695460982333 46.57673101289409 18.365059253186256 34 15.39241261086681 20.530968174703734 45.44533055079377 18.631288663635686 35 16.032197957814713 21.839457404784973 42.96847283297309 19.15987180442722 36 16.990683461280465 23.691436237609004 42.024595662219575 17.29328463889096 37 16.175598121785796 22.988149362748754 42.37728255198628 18.45896996347917 38 16.91406424685101 23.33874934784229 40.81478721025565 18.932399195051055 39 17.883282402921665 22.337631363195946 40.409629574420514 19.369456659461875 40 17.98375195647313 22.4783483640158 40.47611239472311 19.061787284787957 41 15.81992993962883 23.90966684057539 39.8172467764776 20.45315644331818 42 16.560184840128194 23.751956473131102 40.375940970410674 19.31191771633003 43 17.7127524781993 23.202206156368785 39.57576209286726 19.509279272564655 44 17.319221882686143 23.382872475218008 38.865320116270404 20.432585525825445 45 17.294179026608035 22.16471640456138 38.63844376537229 21.9026608034583 46 18.132518446746666 22.952970112543788 39.808004770067825 19.106506670641725 47 15.504807333979281 22.470298874562122 42.93150480733398 19.09338898412462 48 16.24059029589327 21.466199597525527 42.231497354103006 20.0617127524782 49 16.607885518372214 20.584631437728255 43.33129611686666 19.476186927032867 50 15.692926883804128 20.75039129462622 42.85727062681672 20.699411194752926 51 15.27584407840799 20.787359320265335 41.071178355817246 22.865618245509427 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 132.0 1 247.0 2 362.0 3 22114.5 4 43867.0 5 28186.5 6 12506.0 7 12048.5 8 11591.0 9 11387.0 10 11183.0 11 10485.0 12 9787.0 13 9220.5 14 8654.0 15 7927.5 16 7201.0 17 6440.5 18 5680.0 19 5190.0 20 4700.0 21 4356.5 22 4013.0 23 3599.0 24 3185.0 25 3099.5 26 2830.5 27 2647.0 28 2784.5 29 2922.0 30 3100.0 31 3278.0 32 3489.5 33 3701.0 34 4189.0 35 4677.0 36 5061.5 37 5446.0 38 5954.0 39 6462.0 40 7440.0 41 8418.0 42 9542.0 43 10666.0 44 11784.5 45 12903.0 46 16979.5 47 21056.0 48 21467.0 49 21878.0 50 21904.0 51 21930.0 52 19072.0 53 16214.0 54 14719.0 55 13224.0 56 12216.5 57 11209.0 58 10725.5 59 10242.0 60 9559.0 61 8876.0 62 8102.0 63 7328.0 64 6356.5 65 5385.0 66 4573.5 67 3762.0 68 3218.5 69 2675.0 70 2229.5 71 1784.0 72 1617.5 73 1451.0 74 1051.5 75 534.0 76 416.0 77 267.5 78 119.0 79 108.0 80 97.0 81 82.0 82 67.0 83 61.5 84 56.0 85 30.5 86 5.0 87 3.5 88 2.0 89 2.0 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 335425.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.131325158276184 #Duplication Level Percentage of deduplicated Percentage of total 1 81.18750902453418 35.829123595522 2 7.728128536446517 6.821051066137486 3 2.592181146801722 3.4318916717598023 4 1.3225453927134034 2.3346272304966114 5 0.8969474686836706 1.9791740195185905 6 0.6674316839080996 1.7672786798090492 7 0.594014364193565 1.835024873843904 8 0.5194070566523143 1.833769736530117 9 0.4811610980144154 1.911084918298863 >10 3.8977177720669465 28.10881572681996 >50 0.08301619054331326 2.376844979819192 >100 0.024496580816059647 2.1561272211120404 >500 0.0027218423128955167 0.7921815611829475 >1k 0.0020413817346716374 1.0083948758348513 >5k 0.0 0.0 >10k+ 6.804605782238792E-4 7.814609843314573 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 26023 7.75821718715063 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGC 1285 0.3830960721472758 No Hit GAATCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTC 1041 0.3103525378251472 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCG 1032 0.30766937467392114 No Hit GCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTCTGC 835 0.248937914585973 TruSeq Adapter, Index 13 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTCTGC 760 0.2265782216590892 TruSeq Adapter, Index 13 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 539 0.16069165983453826 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA 504 0.15025713646865915 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA 475 0.14161138853693078 No Hit CTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTCTGCT 461 0.1374375791905791 TruSeq Adapter, Index 16 (95% over 22bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA 403 0.1201460833271223 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.14369829321010658 0.0 2 0.0 0.0 0.0 0.7873593202653351 0.0 3 0.0 0.0 0.0 1.1030781843929343 0.0 4 0.0 0.0 0.0 1.5037638816426921 0.0 5 0.0 0.0 0.0 2.7815458001043454 0.0 6 0.0 0.0 0.0 3.2931355742714468 0.0 7 0.0 0.0 0.0 3.864649325482597 0.0 8 0.0 0.0 0.0 4.6901691883431464 0.0 9 0.0 0.0 0.0 4.946560333904748 0.0 10 0.0 0.0 0.0 5.861817097711858 0.0 11 0.0 0.0 0.0 6.884102258328985 0.0 12 0.0 0.0 0.0 8.03726615487814 0.0 13 0.0 0.0 0.0 8.372065290303347 0.0 14 0.0 0.0 0.0 8.526198106879333 0.0 15 0.0 0.0 0.0 8.820153536558099 0.0 16 0.0 0.0 0.0 9.331445181486174 0.0 17 0.0 0.0 0.0 9.907132742043675 0.0 18 0.0 0.0 0.0 10.574345978981889 0.0 19 0.0 0.0 0.0 11.050756502944026 0.0 20 0.0 0.0 0.0 11.459193560408437 0.0 21 0.0 0.0 0.0 11.929045241112021 0.0 22 0.0 0.0 0.0 12.410523962137587 0.0 23 0.0 0.0 0.0 12.854140269806962 0.0 24 0.0 0.0 0.0 13.249757769993293 0.0 25 0.0 0.0 0.0 13.565178504881866 0.0 26 0.0 0.0 0.0 13.861817097711858 0.0 27 0.0 0.0 0.0 14.18707609748826 0.0 28 0.0 0.0 0.0 14.491167921293881 0.0 29 0.0 0.0 0.0 14.802712976075128 0.0 30 0.0 0.0 0.0 15.1750763956175 0.0 31 0.0 0.0 0.0 15.506894238652455 0.0 32 2.981292390251174E-4 0.0 0.0 15.84616531266304 0.0 33 2.981292390251174E-4 0.0 0.0 16.13922635462473 0.0 34 2.981292390251174E-4 0.0 0.0 16.45792651114258 0.0 35 2.981292390251174E-4 0.0 0.0 16.800775136021464 0.0 36 2.981292390251174E-4 0.0 0.0 17.129313557427146 0.0 37 2.981292390251174E-4 0.0 0.0 17.449206230901094 0.0 38 2.981292390251174E-4 0.0 0.0 17.749720503838414 0.0 39 2.981292390251174E-4 0.0 0.0 18.080942088395318 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CACGACC 35 1.208482E-7 45.000004 27 ACCGGTA 20 7.026135E-4 45.0 41 TTAGCGG 20 7.026135E-4 45.0 2 TGGCGTA 20 7.026135E-4 45.0 28 CGCGCGC 20 7.026135E-4 45.0 40 CGATTGT 25 3.8848797E-5 45.0 10 GTTGTAA 20 7.026135E-4 45.0 32 TCAGCCA 25 3.8848797E-5 45.0 41 AGACCTA 25 3.8848797E-5 45.0 32 AAATTCG 20 7.026135E-4 45.0 30 GCGATAT 20 7.026135E-4 45.0 9 CGTACCA 20 7.026135E-4 45.0 31 CGTACAT 20 7.026135E-4 45.0 35 TCGTACA 20 7.026135E-4 45.0 34 CCGGTAT 20 7.026135E-4 45.0 42 CGGTATT 20 7.026135E-4 45.0 43 TGGGACG 25 3.8848797E-5 45.0 6 CGCCCCG 20 7.026135E-4 45.0 25 ATATTAC 20 7.026135E-4 45.0 45 CTTACGG 25 3.8848797E-5 45.0 2 >>END_MODULE