SRR2935709.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935709.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	694943
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	43199	6.216193270527223	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTT	1598	0.22994691650969934	No Hit
CGCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTG	1559	0.22433494545595825	No Hit
CGTTCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTC	1447	0.20821851576316333	No Hit
CCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGC	1083	0.15584011926157973	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	922	0.13267275157818698	No Hit
CGTCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCT	893	0.12849974746130258	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	855	0.12303167310124714	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCT	783	0.11267111115587897	No Hit
GCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGC	755	0.10864200373268022	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	748	0.10763472687688054	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTAACG	20	7.0313603E-4	45.0	1
CGAACGG	20	7.0313603E-4	45.0	2
CATTACG	20	7.0313603E-4	45.0	36
TGCGTCC	20	7.0313603E-4	45.0	42
GCACGAG	25	3.889209E-5	44.999996	1
CGCCTCT	25	3.889209E-5	44.999996	38
CGTTTTT	25200	0.0	44.580357	1
GTGCTAG	55	6.002665E-11	40.909092	1
GCGTAAG	50	1.0804797E-9	40.499996	1
GTTTTTT	27865	0.0	40.429752	2
ATACCGG	45	1.9264917E-8	40.0	2
ACCTGGC	40	3.4555887E-7	39.375	45
TCGCCTC	35	6.2447234E-6	38.57143	37
ATAGCGG	70	0.0	38.57143	2
TTCGTGG	35	6.2447234E-6	38.57143	2
CGTTTCT	210	0.0	38.57143	1
AACACGG	35	6.2447234E-6	38.57143	2
CGGACGG	35	6.2447234E-6	38.57143	2
GGCGATA	135	0.0	38.333332	8
ACAGCGG	65	9.094947E-12	38.07692	2