##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935709.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 694943 Sequences flagged as poor quality 0 Sequence length 51 %GC 34 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.45731952116936 34.0 31.0 34.0 31.0 34.0 2 32.662673053761246 34.0 31.0 34.0 31.0 34.0 3 32.503703181412 34.0 31.0 34.0 31.0 34.0 4 36.10222708912817 37.0 35.0 37.0 35.0 37.0 5 36.13335482190626 37.0 35.0 37.0 35.0 37.0 6 36.153424093774596 37.0 37.0 37.0 35.0 37.0 7 36.30283203082843 37.0 37.0 37.0 35.0 37.0 8 36.10282857730778 37.0 37.0 37.0 35.0 37.0 9 37.914446220769186 39.0 39.0 39.0 35.0 39.0 10 37.771359665468964 39.0 38.0 39.0 35.0 39.0 11 37.741957254048174 39.0 38.0 39.0 35.0 39.0 12 37.71469314749555 39.0 38.0 39.0 35.0 39.0 13 37.75153501797989 39.0 38.0 39.0 35.0 39.0 14 39.17992266991681 41.0 39.0 41.0 35.0 41.0 15 39.27106683569732 41.0 39.0 41.0 35.0 41.0 16 39.30634167118742 41.0 39.0 41.0 35.0 41.0 17 39.25738945496249 41.0 39.0 41.0 35.0 41.0 18 38.609001025983424 39.0 39.0 41.0 35.0 41.0 19 37.93769273163411 38.0 37.0 41.0 35.0 41.0 20 37.15673515669631 37.0 35.0 41.0 34.0 41.0 21 37.11827013150719 37.0 35.0 41.0 34.0 41.0 22 37.10881036286429 37.0 35.0 41.0 34.0 41.0 23 37.10514819200999 37.0 35.0 41.0 34.0 41.0 24 36.95709000594293 37.0 35.0 41.0 34.0 41.0 25 36.878414488670295 37.0 35.0 41.0 34.0 41.0 26 36.710242422759855 37.0 35.0 41.0 33.0 41.0 27 36.63104168255526 36.0 35.0 40.0 33.0 41.0 28 36.483764855534915 36.0 35.0 40.0 33.0 41.0 29 36.220156185471325 36.0 35.0 40.0 33.0 41.0 30 35.720109419045876 36.0 35.0 40.0 31.0 41.0 31 35.05626648516497 36.0 35.0 40.0 25.0 41.0 32 34.032336465005045 36.0 34.0 40.0 18.0 41.0 33 32.866666762597795 36.0 33.0 40.0 12.0 41.0 34 31.879522493211674 36.0 30.0 40.0 8.0 41.0 35 31.28892297641677 36.0 24.0 40.0 7.0 41.0 36 30.907688832033706 36.0 23.0 40.0 7.0 41.0 37 30.723374435025608 36.0 22.0 40.0 7.0 41.0 38 30.558176713773648 36.0 22.0 40.0 7.0 41.0 39 30.423647694846917 35.0 21.0 40.0 7.0 41.0 40 30.30261042992015 35.0 21.0 40.0 7.0 41.0 41 30.12135959352062 35.0 20.0 40.0 7.0 41.0 42 30.00173539412585 35.0 20.0 40.0 7.0 41.0 43 29.892096186305928 35.0 18.0 40.0 7.0 41.0 44 29.784966536823884 35.0 18.0 40.0 7.0 41.0 45 29.724459416095996 35.0 20.0 40.0 7.0 41.0 46 29.66189601161534 35.0 20.0 40.0 7.0 41.0 47 29.659580713813938 35.0 20.0 40.0 7.0 41.0 48 29.58307947558289 35.0 20.0 40.0 7.0 41.0 49 29.5541145101109 35.0 20.0 40.0 7.0 41.0 50 29.44534443832084 35.0 20.0 40.0 7.0 41.0 51 28.822264559827207 35.0 18.0 39.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 4.0 8 6.0 9 18.0 10 13.0 11 12.0 12 10.0 13 13.0 14 20.0 15 41.0 16 92.0 17 170.0 18 333.0 19 681.0 20 1194.0 21 1891.0 22 2993.0 23 5412.0 24 10853.0 25 22758.0 26 38083.0 27 44204.0 28 38300.0 29 28535.0 30 21694.0 31 18450.0 32 16960.0 33 18367.0 34 27789.0 35 39105.0 36 43265.0 37 45195.0 38 86594.0 39 181689.0 40 199.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.55720397212433 13.663422755535345 15.47839175299269 45.30098151934763 2 58.08303702605825 15.588904413743284 15.561995732024064 10.766062828174396 3 20.37663520605287 15.530482356106903 53.227962581103775 10.864919856736451 4 18.148394904330285 16.62107539755059 53.326387919584775 11.904141778534354 5 16.737919512823353 18.88816780656831 51.886845395953344 12.487067284655 6 16.679353558493286 21.81531434952219 51.28765956344621 10.217672528538312 7 51.60480787632943 3.5638894125129688 41.34281516613593 3.488487545021678 8 52.59237088509418 3.2611307689983207 40.934436349456 3.2120619964515074 9 48.463830846558636 5.083438497833635 42.14115402270402 4.311576632903705 10 23.024622163256556 22.878423122471915 45.69957536085693 8.397379353414596 11 17.556835596588495 16.385660406680834 54.14429672649411 11.913207270236551 12 17.34804149405059 14.914748403825925 54.92579966990099 12.811410432222498 13 15.569046670014664 15.037204490152432 56.01394646755201 13.379802372280892 14 12.697588147517132 17.998742342897188 54.96940036808774 14.334269141497934 15 12.366194061959037 18.037738346886005 56.593130659636834 13.002936931518125 16 14.785816966283566 17.65943393918638 54.91659028150511 12.638158813024953 17 14.310094496958744 17.614825964143822 53.71936979004034 14.355709748857102 18 14.704803127738533 17.95960244221469 53.77879912453252 13.556795305514266 19 15.245135212528222 18.586560336603146 52.778429310029736 13.389875140838889 20 16.362061348916384 17.807503636988933 52.92232600371541 12.908109010379269 21 15.577680471635801 17.922764888631153 53.71059209172551 12.788962548007534 22 15.202829584584634 16.383501956275552 53.8071467731886 14.60652168595122 23 14.649834590750608 17.634683707872444 53.80642728972016 13.909054411656783 24 14.638754545336813 16.483797951774463 54.55785582414673 14.319591678741997 25 14.588390702546828 18.35013806887759 52.456676302948594 14.604794925626994 26 14.14705954301288 19.084011206674504 52.397822555231144 14.371106695081467 27 14.752289036654807 18.122493499466863 53.14479029215345 13.980427171724873 28 14.070362605278419 18.591165030801086 53.331855993944835 14.006616369975667 29 14.713724722747045 18.033997032850177 52.67151406662129 14.580764177781488 30 15.847486772296431 17.815274058447958 51.60567125649153 14.731567912764069 31 15.560125075006152 19.15452058658048 50.212751261614265 15.072603076799105 32 16.88555752054485 20.297348127832066 48.21172383922135 14.605370512401736 33 17.15924903193499 21.564214619040698 45.61093499754656 15.665601351477749 34 16.471710629504866 22.806043085548023 44.49990862559951 16.222337659347602 35 17.827793070798613 23.525382657282684 41.61147029324707 17.035353978671633 36 17.78462406269291 26.06141798679892 39.44539336319669 16.70856458731148 37 18.55648592762284 25.628288938805056 40.13365124909525 15.681573884476856 38 18.3761833704347 25.244804250132745 39.15256359154636 17.226448787886202 39 18.87046851324497 24.767067227096323 38.73655825010109 17.625906009557617 40 19.12660462800546 24.2963811420505 39.793911155303384 16.783103074640653 41 17.77901209163917 25.560513596079105 39.12824505031348 17.53222926196825 42 18.564688039162924 25.930328098851273 37.85389593103319 17.65108793095261 43 18.718513604712903 25.14968853560652 38.28011793773015 17.851679921950435 44 18.39791177118123 25.097454035798624 37.5525762544554 18.952057938564746 45 18.44784392389016 23.789145296808513 37.798927394045265 19.964083385256057 46 18.2817871393769 24.66749071506584 37.91274967875063 19.13797246680663 47 17.666197083789605 23.909155139342364 39.97766723313998 18.44698054372805 48 17.718143790210135 23.078439526694993 40.098396559142266 19.105020123952613 49 17.762607868559005 22.877271948922427 39.96126301005982 19.398857172458747 50 16.795046500216564 22.520408148581968 40.78809341197767 19.89645193922379 51 16.743819277264464 22.18009246801536 39.82312218412157 21.252966070598596 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 194.0 1 390.0 2 586.0 3 37828.0 4 75070.0 5 50237.5 6 25405.0 7 24443.5 8 23482.0 9 22801.5 10 22121.0 11 21320.0 12 20519.0 13 19483.0 14 18447.0 15 17257.0 16 16067.0 17 15006.5 18 13946.0 19 12701.5 20 11457.0 21 10554.5 22 9652.0 23 8932.0 24 8212.0 25 7684.5 26 7223.5 27 7290.0 28 7670.0 29 8050.0 30 8740.0 31 9430.0 32 10504.0 33 11578.0 34 12560.5 35 13543.0 36 14874.0 37 16205.0 38 17659.5 39 19114.0 40 20537.0 41 21960.0 42 23592.0 43 25224.0 44 28000.0 45 30776.0 46 36032.5 47 41289.0 48 43573.0 49 45857.0 50 44141.5 51 42426.0 52 37295.0 53 32164.0 54 28282.5 55 24401.0 56 22173.0 57 19945.0 58 19067.5 59 18190.0 60 17495.0 61 16800.0 62 15287.0 63 13774.0 64 11603.0 65 9432.0 66 7548.5 67 5665.0 68 4686.5 69 3708.0 70 2944.5 71 2181.0 72 1915.5 73 1650.0 74 1321.0 75 762.0 76 532.0 77 391.5 78 251.0 79 169.5 80 88.0 81 68.0 82 48.0 83 38.5 84 29.0 85 29.5 86 30.0 87 18.0 88 6.0 89 3.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 694943.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.046216107414736 #Duplication Level Percentage of deduplicated Percentage of total 1 79.1019940135009 35.63245516859588 2 7.6347298157727215 6.878313784060415 3 3.128181266751761 4.227381880957987 4 1.9097144809220221 3.4410164484429107 5 1.3729825095646602 3.0923833418775155 6 1.1444473480086128 3.093181353717219 7 0.9013715120582194 2.8422363147669216 8 0.7660665929875885 2.7606721040311872 9 0.6408856992974521 2.5982528139634185 >10 3.284233345358471 22.108310916852844 >50 0.07167892327281264 2.281199745757828 >100 0.038571611033594536 2.8146135123992706 >500 0.0035357310114121623 1.1516763145028597 >1k 0.0012857203677862409 0.8234326377392209 >5k 0.0 0.0 >10k+ 3.214300919465602E-4 6.254873662334553 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 43199 6.216193270527223 No Hit CGTTTCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTT 1598 0.22994691650969934 No Hit CGCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTG 1559 0.22433494545595825 No Hit CGTTCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTC 1447 0.20821851576316333 No Hit CCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGC 1083 0.15584011926157973 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 922 0.13267275157818698 No Hit CGTCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCT 893 0.12849974746130258 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA 855 0.12303167310124714 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCT 783 0.11267111115587897 No Hit GCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGC 755 0.10864200373268022 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA 748 0.10763472687688054 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.09972040872416875 0.0 2 0.0 0.0 0.0 0.4427701264708041 0.0 3 0.0 0.0 0.0 0.8301400258726255 0.0 4 0.0 0.0 0.0 1.1950620410594825 0.0 5 0.0 0.0 0.0 2.0768609799652635 0.0 6 0.0 0.0 0.0 2.911317906648459 0.0 7 0.0 0.0 0.0 3.5217276812630676 0.0 8 0.0 0.0 0.0 4.349709256730408 0.0 9 0.0 0.0 0.0 4.7727655361662755 0.0 10 0.0 0.0 0.0 5.412674132986447 0.0 11 0.0 0.0 0.0 6.155468865791871 0.0 12 0.0 0.0 0.0 6.803291780764753 0.0 13 0.0 0.0 0.0 7.098711692901432 0.0 14 0.0 0.0 0.0 7.254551812163012 0.0 15 0.0 0.0 0.0 7.45097079904395 0.0 16 0.0 0.0 0.0 7.80020807461907 0.0 17 0.0 0.0 0.0 8.220674213568595 0.0 18 0.0 0.0 0.0 8.667329550768912 0.0 19 0.0 0.0 0.0 8.967210260409846 0.0 20 0.0 0.0 0.0 9.258888858510698 0.0 21 0.0 0.0 0.0 9.623810873697556 0.0 22 0.0 0.0 0.0 10.033196967233284 0.0 23 1.4389669368566917E-4 0.0 0.0 10.420998556716162 0.0 24 1.4389669368566917E-4 0.0 0.0 10.715698985384412 0.0 25 1.4389669368566917E-4 0.0 0.0 10.990973360405098 0.0 26 1.4389669368566917E-4 0.0 0.0 11.264952665182612 0.0 27 1.4389669368566917E-4 0.0 0.0 11.545839011257039 0.0 28 1.4389669368566917E-4 0.0 0.0 11.827732634187264 0.0 29 2.8779338737133835E-4 0.0 0.0 12.127757240521884 0.0 30 2.8779338737133835E-4 0.0 0.0 12.472389821899062 0.0 31 2.8779338737133835E-4 0.0 0.0 12.789250341394906 0.0 32 2.8779338737133835E-4 0.0 0.0 13.091001708053755 0.0 33 2.8779338737133835E-4 0.0 0.0 13.379946268974578 0.0 34 4.3169008105700755E-4 0.0 0.0 13.669322519976458 0.0 35 4.3169008105700755E-4 0.0 0.0 13.975822477526934 0.0 36 4.3169008105700755E-4 0.0 0.0 14.28462478217638 0.0 37 4.3169008105700755E-4 0.0 0.0 14.600478024816423 0.0 38 4.3169008105700755E-4 0.0 0.0 14.927986899645006 0.0 39 4.3169008105700755E-4 0.0 0.0 15.277368071913811 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTAACG 20 7.0313603E-4 45.0 1 CGAACGG 20 7.0313603E-4 45.0 2 CATTACG 20 7.0313603E-4 45.0 36 TGCGTCC 20 7.0313603E-4 45.0 42 GCACGAG 25 3.889209E-5 44.999996 1 CGCCTCT 25 3.889209E-5 44.999996 38 CGTTTTT 25200 0.0 44.580357 1 GTGCTAG 55 6.002665E-11 40.909092 1 GCGTAAG 50 1.0804797E-9 40.499996 1 GTTTTTT 27865 0.0 40.429752 2 ATACCGG 45 1.9264917E-8 40.0 2 ACCTGGC 40 3.4555887E-7 39.375 45 TCGCCTC 35 6.2447234E-6 38.57143 37 ATAGCGG 70 0.0 38.57143 2 TTCGTGG 35 6.2447234E-6 38.57143 2 CGTTTCT 210 0.0 38.57143 1 AACACGG 35 6.2447234E-6 38.57143 2 CGGACGG 35 6.2447234E-6 38.57143 2 GGCGATA 135 0.0 38.333332 8 ACAGCGG 65 9.094947E-12 38.07692 2 >>END_MODULE