SRR2935705.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935705.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	375950
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	26059	6.931506849315068	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	605	0.1609256550073148	No Hit
CCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTGC	566	0.15055193509775236	TruSeq Adapter, Index 15 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTGC	539	0.14337012900651683	TruSeq Adapter, Index 15 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	496	0.13193243782417874	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	465	0.12368666046016757	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	462	0.12288868200558585	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA	386	0.10267322782284878	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAGAC	25	3.8857816E-5	45.0	21
AAGTACG	25	3.8857816E-5	45.0	1
ACGGGCC	25	3.8857816E-5	45.0	5
CGATGGT	20	7.0272246E-4	45.0	10
CCACGAG	25	3.8857816E-5	45.0	40
AATACGG	35	1.2090095E-7	45.0	2
CTCGATC	30	2.1615906E-6	44.999996	16
AGTACGG	30	2.1615906E-6	44.999996	2
CGTTTTT	14520	0.0	44.58161	1
TACGAAT	95	0.0	42.63158	12
GTTTTTT	16045	0.0	40.51262	2
GCTACGA	100	0.0	40.5	10
CGCGGGA	75	0.0	39.0	4
CGAATAT	110	0.0	38.863636	14
AGCTACG	105	0.0	38.57143	9
CTAGGGA	105	0.0	38.57143	4
CGTCTTT	35	6.237078E-6	38.571426	1
TCGATCA	35	6.237078E-6	38.571426	17
CACGAGC	30	1.1384613E-4	37.499996	41
GTAGACG	30	1.1384613E-4	37.499996	1