SRR2935704.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935704.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	524029
Sequences flagged as poor quality	0
Sequence length	51
%GC	35

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	37592	7.173648786612954	No Hit
GCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC	912	0.174036169753964	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	812	0.15495325640374863	No Hit
CCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC	693	0.1322445895169924	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	678	0.12938215251446006	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	579	0.1104900682977469	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCACGG	20	7.029768E-4	45.000004	2
CCCGGTA	20	7.029768E-4	45.000004	25
CGTTTGG	40	6.8030204E-9	45.000004	2
CCGCACG	20	7.029768E-4	45.000004	38
ATAGCGG	35	1.2102282E-7	45.0	2
ACGGGTA	35	1.2102282E-7	45.0	5
CGTTTTT	18960	0.0	44.584656	1
ACGGGAT	90	0.0	42.5	5
TACGGGA	105	0.0	40.714287	4
ATGGGCG	50	1.0786607E-9	40.5	5
GTTTTTT	20915	0.0	40.48171	2
AACGGGA	85	0.0	39.705883	4
ACACGCG	120	0.0	39.374996	36
ACGGGCC	75	0.0	39.0	5
GCGAGAT	175	0.0	38.571426	18
CGACGGA	35	6.241784E-6	38.571426	29
CGGCCTA	35	6.241784E-6	38.571426	45
TCGGCGT	35	6.241784E-6	38.571426	4
ATGACGG	35	6.241784E-6	38.571426	2
AGTACGG	35	6.241784E-6	38.571426	2