SRR2935703.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935703.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	773665
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	48494	6.268087608978046	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGC	1588	0.20525679719258336	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTC	1452	0.18767812942294146	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCG	1245	0.1609223630382659	No Hit
GCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGC	1173	0.1516160095131614	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	1110	0.1434729501786949	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	926	0.11969004672564998	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	823	0.10637679098834767	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAATGCG	70	0.0	45.000004	1
TACTTCG	25	3.88962E-5	45.0	28
TTAGACG	20	7.0318556E-4	45.0	1
CGATTCG	25	3.88962E-5	45.0	10
ACGATAG	20	7.0318556E-4	45.0	1
CGTAGCG	20	7.0318556E-4	45.0	1
ACTACGG	20	7.0318556E-4	45.0	2
GCGATTC	40	6.8102963E-9	45.0	9
CACCGGT	20	7.0318556E-4	45.0	40
TACGTAC	20	7.0318556E-4	45.0	13
TAATCGG	20	7.0318556E-4	45.0	2
ACGCACT	30	2.1645792E-6	44.999996	40
TACGCAC	30	2.1645792E-6	44.999996	39
GCTAGCG	60	0.0	44.999996	1
CGTTTTT	28735	0.0	44.639812	1
CGTAAGG	110	0.0	40.909092	2
GTTTTTT	32145	0.0	40.04433	2
GGCGTAG	45	1.9268555E-8	40.0	1
TACGAGG	45	1.9268555E-8	40.0	2
TCGTAAG	45	1.9268555E-8	40.0	1