SRR2935701.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935701.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	535001
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	32385	6.0532597135332455	No Hit
CCTGTCTCTTATACACATCTGACGCTCCAAAGCTCGTATGCCGTCTTCTGC	733	0.1370090897026361	RNA PCR Primer, Index 13 (95% over 24bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	720	0.1345791877024529	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	673	0.12579415739409833	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	622	0.11626146493184125	No Hit
GCTGTCTCTTATACACATCTGACGCTCCAAAGCTCGTATGCCGTCTTCTGC	606	0.11327081631623119	Illumina Single End Adapter 1 (95% over 23bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	553	0.10336429277702285	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA	541	0.1011213063153153	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGATG	20	7.029902E-4	45.0	1
GACGTAG	20	7.029902E-4	45.0	1
TAACGTG	20	7.029902E-4	45.0	1
ACGGGTC	40	6.8030204E-9	45.0	5
TAGTTCG	20	7.029902E-4	45.0	1
AACGGGC	35	1.210301E-7	45.0	4
AAATGCG	20	7.029902E-4	45.0	1
CGTTTTT	19580	0.0	44.52886	1
TACGAAT	85	0.0	42.352943	12
CGAATAT	85	0.0	42.352943	14
CGTGCGG	70	0.0	41.785713	2
CGACCAG	45	1.9250365E-8	40.0	12
GCTACGA	90	0.0	40.0	10
CCTATGC	90	0.0	40.0	35
AGCTACG	90	0.0	40.0	9
GTTTTTT	21890	0.0	39.963455	2
ACGGGAG	170	0.0	39.705883	5
TACGGGT	40	3.453606E-7	39.375	4
CCTCGTC	75	0.0	39.0	36
CGAACGG	35	6.2420295E-6	38.571426	2