SRR2935697.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935697.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	398435
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	29501	7.404219006864357	No Hit
GCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTCTGC	941	0.23617403089588015	TruSeq Adapter, Index 14 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTCTGC	895	0.22462886041637908	TruSeq Adapter, Index 14 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	604	0.15159310803518766	No Hit
CTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTCTGCT	579	0.1453185588615458	TruSeq Adapter, Index 21 (95% over 23bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	534	0.13402437034899042	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	499	0.1252400015058918	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA	415	0.1041575162824551	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTAAGT	20	7.027731E-4	45.000004	28
GGTACAC	20	7.027731E-4	45.000004	8
TACCAAG	20	7.027731E-4	45.000004	29
TTTCGCG	20	7.027731E-4	45.000004	1
CGCGACC	20	7.027731E-4	45.000004	10
GCTGACG	20	7.027731E-4	45.000004	1
GACCCAC	30	2.161918E-6	45.000004	12
TGCGAGG	60	0.0	45.000004	2
TCAGACG	20	7.027731E-4	45.000004	22
GGTGCGT	20	7.027731E-4	45.000004	9
CAAGCGC	20	7.027731E-4	45.000004	27
TAGGCGG	20	7.027731E-4	45.000004	2
CAGTCCC	20	7.027731E-4	45.000004	38
GCGTAAG	20	7.027731E-4	45.000004	1
GTACCGG	25	3.8862017E-5	45.0	2
TCGATGG	25	3.8862017E-5	45.0	2
GCGGGTA	45	3.8380676E-10	45.0	5
GGTATTA	25	3.8862017E-5	45.0	8
CGAATGG	25	3.8862017E-5	45.0	2
CGTTTTT	15240	0.0	44.542324	1