SRR2935696.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935696.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	216208
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16487	7.625527270036262	No Hit
GCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGC	713	0.32977503145119513	TruSeq Adapter, Index 13 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGC	658	0.304336564789462	TruSeq Adapter, Index 13 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGCT	366	0.1692814326944424	TruSeq Adapter, Index 16 (95% over 24bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	299	0.13829275512469474	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	270	0.12487974543032634	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	253	0.11701694664397247	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	225	0.10406645452527197	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA	221	0.10221638422260046	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGATTC	70	0.0	45.0	43
CGGGTAG	20	7.0205715E-4	45.0	6
TCGTTCC	20	7.0205715E-4	45.0	13
CAACGAG	20	7.0205715E-4	45.0	14
CTATCCA	20	7.0205715E-4	45.0	28
GAGTCCA	20	7.0205715E-4	45.0	36
ATAATAC	20	7.0205715E-4	45.0	23
GCTATCC	20	7.0205715E-4	45.0	27
ATGCTTT	70	0.0	45.0	38
CGACAGG	20	7.0205715E-4	45.0	2
CCGCTAT	20	7.0205715E-4	45.0	25
CGTTCCT	20	7.0205715E-4	45.0	14
GGCCCGC	20	7.0205715E-4	45.0	22
TATGAGG	20	7.0205715E-4	45.0	2
TATTGCG	20	7.0205715E-4	45.0	1
CAGGGCG	20	7.0205715E-4	45.0	5
AACGGGA	20	7.0205715E-4	45.0	4
CGCTATC	20	7.0205715E-4	45.0	26
CTACGAA	70	0.0	45.0	11
CGCTAGG	20	7.0205715E-4	45.0	2