SRR2935695.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935695.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	600369
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	46475	7.741072573700508	No Hit
GCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTCTGC	985	0.16406576622044108	TruSeq Adapter, Index 13 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	947	0.15773632549315506	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	816	0.1359164114069847	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	801	0.13341794796200335	No Hit
CCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTCTGC	686	0.11426306155047979	TruSeq Adapter, Index 13 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA	612	0.10193730855523854	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTGCAAG	70	0.0	45.0	1
CTCACGT	20	7.030592E-4	45.0	45
TACGGGT	35	1.2106284E-7	45.0	4
ACGATAG	20	7.030592E-4	45.0	1
TTGCACG	25	3.8885715E-5	45.0	1
TATACGG	20	7.030592E-4	45.0	2
CGATAGG	55	1.8189894E-12	45.0	2
GCGATTA	30	2.1637625E-6	44.999996	9
CGTTTTT	23220	0.0	44.389538	1
TGCACGG	65	0.0	41.538464	2
GTTTTTT	25650	0.0	40.34211	2
CGTAAGG	85	0.0	39.705883	2
CTACGAA	125	0.0	39.6	11
TACGAAT	125	0.0	39.6	12
CGAATAT	125	0.0	39.6	14
CGTATGG	35	6.243303E-6	38.571426	2
CGACGGT	35	6.243303E-6	38.571426	28
CGGTCTA	35	6.243303E-6	38.571426	31
ACGGTCT	35	6.243303E-6	38.571426	30
GCGCGAC	65	9.094947E-12	38.076927	9