SRR2935694.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935694.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	270437
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	21440	7.927909272769629	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGC	986	0.36459508129434953	No Hit
GCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGC	976	0.3608973624171249	Illumina PCR Primer Index 5 (95% over 23bp)
GAATCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTC	883	0.3265085768589357	No Hit
CCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGC	880	0.32539926119576834	Illumina PCR Primer Index 5 (95% over 23bp)
GAATGATACCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCG	823	0.30432226359558784	No Hit
CTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGCT	515	0.19043252217706896	Illumina PCR Primer Index 5 (95% over 24bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	384	0.14199240488542617	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	376	0.13903422978364646	No Hit
CGCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTG	338	0.12498289805019283	Illumina PCR Primer Index 5 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGC	337	0.12461312616247039	Illumina PCR Primer Index 5 (95% over 23bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	322	0.11906654784663341	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA	295	0.10908270687812688	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	30	2.1593241E-6	45.000004	25
ATGGGCG	30	2.1593241E-6	45.000004	5
CCTAGGG	35	1.2073178E-7	45.000004	3
CGTAAGG	35	1.2073178E-7	45.000004	2
TTTGCGG	30	2.1593241E-6	45.000004	2
CGGTCTA	30	2.1593241E-6	45.000004	31
TAGTGAG	30	2.1593241E-6	45.000004	1
CGCCGGT	35	1.2073178E-7	45.000004	28
TATACGG	30	2.1593241E-6	45.000004	2
CGGGTCT	20	7.02371E-4	45.0	6
CTATGCG	20	7.02371E-4	45.0	27
CGACGTT	20	7.02371E-4	45.0	27
ACGCACG	20	7.02371E-4	45.0	1
GACGTTT	20	7.02371E-4	45.0	28
TTTCGAC	20	7.02371E-4	45.0	24
TCGATCT	20	7.02371E-4	45.0	13
AGAGTGC	20	7.02371E-4	45.0	1
CGCCTAG	20	7.02371E-4	45.0	1
GACGGCC	20	7.02371E-4	45.0	35
ATTGGGC	20	7.02371E-4	45.0	4